View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_14 (Length: 356)
Name: NF18633_low_14
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 46642756 - 46643079
Alignment:
| Q |
14 |
gacatcatcaacaaccaattctcaggaacatttccggaggttgttctttgcattccttcattaaaatacttagacataagatacaacaattttcaaggaa |
113 |
Q |
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| T |
46642756 |
gacatcagtaacaaccaattctcaggaacattcccggaggttgttctttgcattccttcattaaaatacttggacataagatacaacaattttcaaggaa |
46642855 |
T |
|
| Q |
114 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642856 |
atgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagc |
46642955 |
T |
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| Q |
214 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacgaacagc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
46642956 |
ttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacgaacagc |
46643055 |
T |
|
| Q |
314 |
aaaatgaaaggctgtttacctaat |
337 |
Q |
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| T |
46643056 |
agaatgaaaggctgtttacctaat |
46643079 |
T |
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