View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_17 (Length: 343)
Name: NF18633_low_17
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 38370593 - 38370267
Alignment:
| Q |
20 |
atgccactaaaagggtcttttgatacgatatataccaaagttataggatttttt-atggctaaaaggaataggagttgcctaaacgtgcactaaagtatc |
118 |
Q |
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| T |
38370593 |
atgccattaaaagggtcttttgatatgatatataccaaagttataggatttttttatggctaaaaggaatagaagttgctcaaacgtgcactaaggcatc |
38370494 |
T |
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| Q |
119 |
gtagt------------actttaattcgtgtcaattatagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaa |
206 |
Q |
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| T |
38370493 |
gtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaa |
38370394 |
T |
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| Q |
207 |
atc------acgtgcaatgccacttttgaaatatccttttttctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatca |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370393 |
atcgaaatcacgtgcaatgccacttttgaaatatccttttttctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatca |
38370294 |
T |
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| Q |
301 |
atattgctcttggtcgtctgtgctcct |
327 |
Q |
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| T |
38370293 |
atattgctcttggtcgtgtgtgttcct |
38370267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 38364127 - 38363804
Alignment:
| Q |
19 |
aatgccactaaaagggtcttttgatacgatatataccaaagttataggatttttt-atggctaaaaggaataggagttgcctaaacgtgcactaaagtat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||| |||||| ||||||||| ||| | || |
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| T |
38364127 |
aatgccactaaaagggtcttttgatatgatatataccaaagttataagatttttttatagctaaaaggaatagaagttgctcaaacgtgcattaaggcat |
38364028 |
T |
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| Q |
118 |
cgtagt------------actttaattcgtgtcaattatagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttga |
205 |
Q |
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||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38364027 |
cgtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttga |
38363928 |
T |
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| Q |
206 |
------aatcacgtgcaatgccacttttgaaatatccttttttctatct---------atatgctatatccagagtgttatcctcatataacggtgccta |
290 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38363927 |
aatcgaaatcacgtgcaatgccacttttgaaatatccttttatatatctatatctatcatatgctatatccagagtgttatcctcatataatggtgccta |
38363828 |
T |
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| Q |
291 |
ttggtaatcaatattgctcttggt |
314 |
Q |
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||||||||||||||| |||||||| |
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| T |
38363827 |
ttggtaatcaatattcctcttggt |
38363804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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