View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_18 (Length: 320)
Name: NF18633_low_18
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 38548125 - 38548428
Alignment:
| Q |
1 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaaga |
100 |
Q |
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| T |
38548125 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaaga |
38548224 |
T |
|
| Q |
101 |
tttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatctc |
200 |
Q |
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| T |
38548225 |
tttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatctc |
38548324 |
T |
|
| Q |
201 |
tcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagactggtaacatat |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38548325 |
tcccagataggactcatc---tcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagagtggtaacatat |
38548421 |
T |
|
| Q |
301 |
tgtaatt |
307 |
Q |
| |
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||||||| |
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| T |
38548422 |
tgtaatt |
38548428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 38556224 - 38556528
Alignment:
| Q |
1 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaag- |
99 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38556224 |
gtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattggaggcaaat |
38556323 |
T |
|
| Q |
100 |
atttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatct |
199 |
Q |
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||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| |||| || ||||| |
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| T |
38556324 |
atttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgagcctcatct |
38556423 |
T |
|
| Q |
200 |
ctcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagactggtaacata |
299 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
38556424 |
ctcccagataggactcatc---tcttcatctaataaataaaagctagttgattaaatgaatggatccatgtgataatgatatatatagagtggtaccata |
38556520 |
T |
|
| Q |
300 |
ttgtaatt |
307 |
Q |
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||||||| |
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| T |
38556521 |
ctgtaatt |
38556528 |
T |
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