View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_22 (Length: 297)
Name: NF18633_low_22
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_22 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 77 - 297
Target Start/End: Original strand, 11615356 - 11615573
Alignment:
| Q |
77 |
tgttagaacatgaactggtccaatgcgcagctataagtgcttatatgaataagatgttttcagcaagatgattttataacagaaacaataaaattgaagg |
176 |
Q |
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| T |
11615356 |
tgttagaacatgaactggttctatgcgcagcaataagtgcttatatgaataagctgtttt-agcaagatgagtttataaca--aacaataaaattgaagg |
11615452 |
T |
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| Q |
177 |
agagaactagaatgaatgataattggtaatgatgtgaatgtgattcatatattgagtttcacaatacaaagcctttatataggcacacaagccacttgct |
276 |
Q |
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| T |
11615453 |
agagaaatagaatgaatgatgattggtaatgatgtgaatgtgattcatattttgagtttcacaatacaaagcctttatataggcacacaagtcacttgct |
11615552 |
T |
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| Q |
277 |
tttggagcaagcaatctaact |
297 |
Q |
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| T |
11615553 |
tgtgtagcaagcaatctaact |
11615573 |
T |
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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 6681734 - 6681802
Alignment:
| Q |
229 |
tgagtttcacaatacaaagcctttatataggcacacaagccacttgcttttggagcaagcaatctaact |
297 |
Q |
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| T |
6681734 |
tgagtttcacaatacaaagcctttatataggcacacaagccacttgcttgtggagcaagtaatataact |
6681802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 11859960 - 11860018
Alignment:
| Q |
239 |
aatacaaagcctttatataggcacacaagccacttgcttttggagcaagcaatctaact |
297 |
Q |
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| T |
11859960 |
aatacgaaacctttatataggcacacaagccacttgcttgtggaacaagtaatctaact |
11860018 |
T |
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