View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_24 (Length: 259)
Name: NF18633_low_24
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 25695549 - 25695801
Alignment:
| Q |
8 |
acatcatcataataataacctcaatctcaacttt-cacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat |
106 |
Q |
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| T |
25695549 |
acatcatcatcataataacctcaatctcaacttttcacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat |
25695648 |
T |
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| Q |
107 |
catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25695649 |
catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct |
25695748 |
T |
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| Q |
207 |
gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25695749 |
gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccc |
25695801 |
T |
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