View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18633_low_26 (Length: 250)

Name: NF18633_low_26
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18633_low_26
NF18633_low_26
[»] chr4 (5 HSPs)
chr4 (1-242)||(4644882-4645123)
chr4 (1-91)||(901593-901683)
chr4 (4-182)||(42459154-42459333)
chr4 (11-134)||(33319341-33319465)
chr4 (13-84)||(30844939-30845010)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-161)||(10508-10669)
[»] chr2 (4 HSPs)
chr2 (1-183)||(15342900-15343083)
chr2 (1-177)||(32467239-32467415)
chr2 (20-84)||(3408456-3408520)
chr2 (18-71)||(16363165-16363218)
[»] chr6 (2 HSPs)
chr6 (2-134)||(25062480-25062613)
chr6 (49-161)||(29603154-29603266)
[»] chr5 (7 HSPs)
chr5 (47-236)||(32421045-32421232)
chr5 (1-91)||(17221757-17221847)
chr5 (4-84)||(43453173-43453253)
chr5 (13-72)||(38364923-38364982)
chr5 (13-71)||(6658717-6658775)
chr5 (104-134)||(17221861-17221891)
chr5 (18-84)||(20828372-20828438)
[»] chr7 (8 HSPs)
chr7 (4-83)||(28244420-28244499)
chr7 (2-134)||(20216358-20216491)
chr7 (13-84)||(31188240-31188311)
chr7 (20-84)||(39973439-39973503)
chr7 (20-84)||(47247688-47247752)
chr7 (1-44)||(4577979-4578022)
chr7 (1-72)||(26630486-26630557)
chr7 (20-84)||(20219336-20219400)
[»] chr3 (7 HSPs)
chr3 (1-134)||(23458483-23458617)
chr3 (13-84)||(51897504-51897575)
chr3 (20-81)||(8626628-8626689)
chr3 (1-74)||(27991685-27991758)
chr3 (13-84)||(39348083-39348154)
chr3 (13-81)||(42722970-42723038)
chr3 (13-84)||(43722387-43722458)
[»] chr8 (5 HSPs)
chr8 (13-91)||(8269109-8269187)
chr8 (1-84)||(14090408-14090491)
chr8 (13-84)||(36831834-36831905)
chr8 (13-84)||(42277714-42277785)
chr8 (35-84)||(27470687-27470736)
[»] chr1 (6 HSPs)
chr1 (13-83)||(42097082-42097152)
chr1 (20-84)||(50543595-50543659)
chr1 (13-84)||(43628339-43628410)
chr1 (13-83)||(28793668-28793738)
chr1 (13-82)||(10885700-10885769)
chr1 (11-84)||(23047431-23047504)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-84)||(235377-235460)
[»] scaffold0391 (1 HSPs)
scaffold0391 (20-60)||(490-530)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4644882 - 4645123
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4644882 cagcaaacacgacacatcatcaagtgtcactatcatctccccaaacaaaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatgcataacac 4644981  T
Q  101 aaccgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcagtcattcacgccaccaccatgctgtcattatattagtctt 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  4644982 aaccgtggtcaatctggctgtagctggtatcctgcatccactgaacatcggtggctctcagtccttcacgccaccaccatgctgtcataatattagtctt 4645081  T
Q  201 gttttgcttatcatgtatcacgtctatctttttccctttgct 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  4645082 gttttgcttatcatgtatcgcgtctatctttttccctttgct 4645123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 901683 - 901593
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 91  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||  |||||||||||||| | ||||| ||||| |||||||||||||||    
T  901683 cagcaaacatgacacatcatcaagtgtcactgtcatctccccaaatagaagatggaagctcaaagtctcatcgtgccacctctctgcaaat 901593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 42459154 - 42459333
Alignment:
Q  4 caaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacaca-a 102  Q
    |||||| |||||| |||||||||||||| ||||||||  ||  |||| |||||||||||| ||||||||||| |||||||| |||||| || |||| |      
T  42459154 caaacatgacacatcatcaagtgtcactgtcatctccttaattggaatatggaagctcgaagtctcctcgtggcacctctccgcaaatgcagaacatagg 42459253  T
Q  103 ccgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcagtcattcacgccaccaccatgc 182  Q
     | |||| ||||||||||||| | |||||||| |  ||   || | ||||||| |||||||  |||||||||||||||||    
T  42459254 tcatggttaatctggctgtagtttgtatcctgaagtcaagaaataccggtggcactcagtctatcacgccaccaccatgc 42459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 33319341 - 33319465
Alignment:
Q  11 gacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaac-cgtggt 109  Q
    |||||| |||| ||||||||| |||||||| || ||||||||||||| ||||||||||||||||| || || ||  ||||| || ||||||||  |  ||    
T  33319341 gacacatcatcgagtgtcactgtcatctccgcacacggaagatggaaactcgatgtctcctcgtgccatctatccacaaatgcaaaacacaacttgcagt 33319440  T
Q  110 caatctggctgtagctggtatcctg 134  Q
    |||||||| |||||||| |||||||    
T  33319441 caatctggttgtagctgctatcctg 33319465  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30844939 - 30845010
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| ||| | |||||| |||||||||| |||||||| || ||||||||||| ||| ||||    
T  30844939 cacatcatcaagtgtgactgttatctcctcaaacggaaggtggaagctggaagtctcctcgtgccacatctc 30845010  T

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Target: scaffold0481 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10669 - 10508
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacac 100  Q
    ||||||||| |||||| |||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||  |||||||||||||| || |||||    
T  10669 cagcaaacatgacacatcatcaagtgtcactgtcatctcccgaaacgcaagatggaggctcgatgtctcctcgtgcgacctctctgcaaatgcacaacac 10570  T
Q  101 aa-ccgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcag 161  Q
    || |||||| |||||||| |||||||| ||||||| | ||| |||| |||| | ||||||||    
T  10569 aacccgtggccaatctgggtgtagctgctatcctgcaaccattgaagatcgattgctctcag 10508  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 15343083 - 15342900
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacac 100  Q
    ||||||||| |||||| |||| ||| |||| |||||||||| ||| ||||||||||||||||||||||||  ||| |||||||| |||||| || |||||    
T  15343083 cagcaaacatgacacatcatcgagtatcacaatcatctcccaaaatggaagatggaagctcgatgtctccgtgtgccacctctccgcaaatgcagaacac 15342984  T
Q  101 aac-cgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcagtcattcacgccaccaccatgct 183  Q
    |||  ||||||||||||| |||||| |||||||| || | |||||| | ||||||||||||| |  ||||||||||||| ||||    
T  15342983 aacatgtggtcaatctggttgtagccggtatcctatagcaactgaagaccggtggctctcagaccatcacgccaccaccgtgct 15342900  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 32467239 - 32467415
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacac 100  Q
    ||||||||| |||||| |||||||||||||| ||||||||  ||| |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||    
T  32467239 cagcaaacatgacacatcatcaagtgtcactgtcatctcctaaaatggaagatggaagctcgatgtatcctcgtgccacctctccgcaaatacagaacac 32467338  T
Q  101 a-accgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcagtcattcacgccaccac 177  Q
    |  || | || ||||| | |||||||||||| ||| | ||||| || |  |||||||||||||| ||||| |||||||    
T  32467339 agcccatagttaatct-gttgtagctggtattctgcaaccactaaagactggtggctctcagtccttcacaccaccac 32467415  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 3408456 - 3408520
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||| ||| ||||||||| ||||||||| |||||||| || ||||||||||| ||||||||    
T  3408456 tcaagtgtgactgtcatctcccgaaacggaaggtggaagctggaagtctcctcgtgccacctctc 3408520  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16363218 - 16363165
Alignment:
Q  18 catcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcct 71  Q
    ||||||||||| |||| |||||||||| | ||||||||||||| || |||||||    
T  16363218 catcaagtgtcgctatgatctccccaatcagaagatggaagctagacgtctcct 16363165  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 25062480 - 25062613
Alignment:
Q  2 agcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacaca 101  Q
    |||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||   |||| || |   ||    
T  25062480 agcaaacatgacacatcatcaagtgtcactgtcatcttcccaaacgaaagatggaagctcgaagtctcctcgtgtcacctctccataaatgcagatagca 25062579  T
Q  102 -accgtggtcaatctggctgtagctggtatcctg 134  Q
     ||||||||||||||||| ||||||| |||||||    
T  25062580 gaccgtggtcaatctggcagtagctgatatcctg 25062613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 29603154 - 29603266
Alignment:
Q  49 aagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaacc-gtggtcaatctggctgtagctggtatcctgtatccactgaaca 147  Q
    |||||| ||| |||||||||||| ||| || |||||||||| | || || ||| || |||||||||||||| ||||||||||||||| | ||||| || |    
T  29603154 aagatgaaagatcgatgtctccttgtgccatctctctgcaa-tgcagaagacagcccgtggtcaatctggcagtagctggtatcctgcagccactaaaga 29603252  T
Q  148 tcggtggctctcag 161  Q
     |||| ||||||||    
T  29603253 ccggtagctctcag 29603266  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 32421232 - 32421045
Alignment:
Q  47 ggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaac-cgtggtcaatctggctgtagctggtatcctgtatccactgaa 145  Q
    ||||||||||||||||||||||||||||| |||||||| | |||  || |||||||| |||||||||| ||| ||||| || |||| || | ||||||||    
T  32421232 ggaagatggaagctcgatgtctcctcgtgccacctctccgtaaaggcagaacacaacacgtggtcaatatggttgtagttgatatcttgcagccactgaa 32421133  T
Q  146 catcggtggctctcagtcattcacgccaccaccatgctgtcattatattagtcttgttttgcttatcatgtatcacgtctatctttttccc 236  Q
     |  ||||||||||||||  ||||||||||||  ||||||||| |   ||| ||||||||| | |||||||||| || ||||||| |||||    
T  32421132 gactggtggctctcagtccatcacgccaccactgtgctgtcatga---tagccttgttttgatcatcatgtatcgcggctatcttcttccc 32421045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 17221757 - 17221847
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 91  Q
    ||||||||| |||||| |||||||||||||| ||||||| ||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  17221757 cagcaaacaggacacatcatcaagtgtcactgtcatctcgccaaaaggaggatggaagctcgaagtctcctcgtgccacctctccgcaaat 17221847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 43453173 - 43453253
Alignment:
Q  4 caaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||| |||||| |||||||||||| | |||||||||||||||||||||||||||| ||  ||||||| || ||||||||    
T  43453173 caaacatgacacatcatcaagtgtcattgtcatctccccaaacggaagatggaagcttgaaatctcctcatgccacctctc 43453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 38364982 - 38364923
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctc 72  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||| || || ||||||||    
T  38364982 cacatcatcaagtgtgactatcatctccccaaatggaaggtggaatctagaagtctcctc 38364923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 6658775 - 6658717
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcct 71  Q
    |||| |||||||||| ||| |||||||||||||| |||| |||||||| || |||||||    
T  6658775 cacatcatcaagtgtgactgtcatctccccaaacagaaggtggaagctggaagtctcct 6658717  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Original strand, 17221861 - 17221891
Alignment:
Q  104 cgtggtcaatctggctgtagctggtatcctg 134  Q
    |||||||||||||||||||||||||||||||    
T  17221861 cgtggtcaatctggctgtagctggtatcctg 17221891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 20828372 - 20828438
Alignment:
Q  18 catcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||||| ||| ||| |||||| |||||||| ||||| || || ||||||||||| ||||||||    
T  20828372 catcaagtgtgactgtcacctccccgaacggaaggtggaacctggaagtctcctcgtgccacctctc 20828438  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 28244499 - 28244420
Alignment:
Q  4 caaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 83  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  28244499 caaacatgacacatcatcaagtgtcactgtcatctccccaaacggaagatggaagctcgaagtctcctcgtgacacctct 28244420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 20216358 - 20216491
Alignment:
Q  2 agcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacaca 101  Q
    |||||||| |||||| |||||||||||| | ||||||||||||||||||| || || ||||| ||||||||||  ||||||||  ||||| || ||   |    
T  20216358 agcaaacaagacacatcatcaagtgtcattgtcatctccccaaacggaaggtgaaaactcgaagtctcctcgtaccacctctccacaaatgcagaaatta 20216457  T
Q  102 -accgtggtcaatctggctgtagctggtatcctg 134  Q
     |||||||||||||  |||||||||||| |||||    
T  20216458 gaccgtggtcaatcaagctgtagctggtgtcctg 20216491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 31188240 - 31188311
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| ||| ||||||||||||||||||| |||||||| || ||||||| ||| ||||||||    
T  31188240 cacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctccttgtgccacctctc 31188311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 39973503 - 39973439
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||| | | ||||||||||||||||||| |||||||| || ||||||||||  ||||||||    
T  39973503 tcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtaccacctctc 39973439  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 47247752 - 47247688
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||| ||| |||||||| |||| ||||| |||||||| || ||||||||||| ||||||||    
T  47247752 tcaagtgtgactgtcatctccacaaatggaaggtggaagctggaagtctcctcgtgccacctctc 47247688  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4578022 - 4577979
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaa 44  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||    
T  4578022 cagcaaacatgacacatcatcaagtgtcactttcatctccccaa 4577979  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26630486 - 26630557
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctc 72  Q
    ||||||||| |||||  |||||||||||| | || |||||||||| | || |||||||||||| ||||||||    
T  26630486 cagcaaacaagacacgtcatcaagtgtcattgtcctctccccaaatgaaatatggaagctcgaagtctcctc 26630557  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 20219336 - 20219400
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||| | | |||||||||||||| |||| |||||||| || ||||||| ||| ||||||||    
T  20219336 tcaagtgtgattgtcatctccccaaacagaaggtggaagctggaagtctccttgtgccacctctc 20219400  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 23458617 - 23458483
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacac 100  Q
    ||||||||| |||||| |||| |||| ||||||||| ||||||||||||||||| ||| |||||||||||||||| || |||||  ||| | || ||||     
T  23458617 cagcaaacatgacacatcatccagtgccactatcatatccccaaacggaagatgaaagttcgatgtctcctcgtgccatctctccacaattgcagaacaa 23458518  T
Q  101 a-accgtggtcaatctggctgtagctggtatcctg 134  Q
    |  ||||| |||||||||||||||||| |||||||    
T  23458517 agcccgtgttcaatctggctgtagctgatatcctg 23458483  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 51897575 - 51897504
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| | | ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  51897575 cacatcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctc 51897504  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 8626628 - 8626689
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacct 81  Q
    |||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  8626628 tcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacct 8626689  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27991685 - 27991758
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgt 74  Q
    ||||||||| |||||| |||||||||||||  ||||||||  ||| ||||||||||||||||| |||| |||||    
T  27991685 cagcaaacatgacacatcatcaagtgtcaccgtcatctccgtaaatggaagatggaagctcgaagtcttctcgt 27991758  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 39348154 - 39348083
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| | | ||||||||||||||||||| |||||||| || || |||||||| ||||||||    
T  39348154 cacatcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtatcctcgtgccacctctc 39348083  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 42723038 - 42722970
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacct 81  Q
    |||| |||||||||| ||| |||| |||||||||| ||| |||||||| || ||||||||||| |||||    
T  42723038 cacatcatcaagtgtgactgtcatttccccaaacgaaaggtggaagctggaagtctcctcgtgccacct 42722970  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 43722458 - 43722387
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||  ||| ||||||||| |||| |||| |||||||| || ||||||||||| ||||||||    
T  43722458 cacatcatcaagtgagactgtcatctccctaaacagaaggtggaagctggaagtctcctcgtgccacctctc 43722387  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 8269187 - 8269109
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 91  Q
    |||| ||| |||||||||| ||||||||| ||| |||||||||||||| |||||||||||||| |||||||| ||||||    
T  8269187 cacatcattaagtgtcactgtcatctcccgaaatggaagatggaagcttgatgtctcctcgtgccacctctccgcaaat 8269109  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14090408 - 14090491
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    ||||||||| |||||| |||||||||||||| ||||| |||| || | ||| ||||| ||||| ||||||||||||||||||||    
T  14090408 cagcaaacatgacacatcatcaagtgtcactgtcatcccccctaatgaaaggtggaaactcgaagtctcctcgtgtcacctctc 14090491  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 36831905 - 36831834
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  36831905 cacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctc 36831834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 42277785 - 42277714
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| ||| ||||||||||||||||||| |||||| | || ||||||||||| ||||||||    
T  42277785 cacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagttggaagtctcctcgtgccacctctc 42277714  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 27470687 - 27470736
Alignment:
Q  35 atctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  27470687 atctccccaaacggaaggtggaagctggaagtctcctcgtgtcacctctc 27470736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 42097082 - 42097152
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 83  Q
    |||| |||||||||| ||| ||||||||| ||||||||| |||||||| || |||||||||||||||||||    
T  42097082 cacatcatcaagtgtgactgtcatctccctaaacggaaggtggaagctggaagtctcctcgtgtcacctct 42097152  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 50543659 - 50543595
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  50543659 tcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctc 50543595  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 43628339 - 43628410
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||| |||||||||| ||| ||||||||||||||||||| |||||| | || ||||||||||| ||||||||    
T  43628339 cacatcatcaagtgtgactgtcatctccccaaacggaaggtggaaggtggaagtctcctcgtgccacctctc 43628410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 28793668 - 28793738
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 83  Q
    |||| |||||||||| ||| ||||||||||||| ||||| |||||||| || ||||||||||| |||||||    
T  28793668 cacatcatcaagtgtgactgtcatctccccaaatggaaggtggaagctggaagtctcctcgtgccacctct 28793738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 10885769 - 10885700
Alignment:
Q  13 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctc 82  Q
    |||| |||||||||| ||| |||| |||||||| ||||| |||||||| || ||||||||||| ||||||    
T  10885769 cacatcatcaagtgtgactttcatttccccaaatggaagctggaagctggaagtctcctcgtgccacctc 10885700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 23047504 - 23047431
Alignment:
Q  11 gacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    |||||| || ||| ||||||| |||||||||||| || |||| ||||||| ||||||| ||||||||| |||||    
T  23047504 gacacaccaacaaatgtcactctcatctccccaatcgaaagacggaagctagatgtcttctcgtgtcatctctc 23047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 235460 - 235377
Alignment:
Q  1 cagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 84  Q
    ||||||||| | |||| |||||||||| | | ||||||||||||| ||||| |||||||| || |||| |||||| ||||||||    
T  235460 cagcaaacaggccacatcatcaagtgtgaatgtcatctccccaaatggaaggtggaagctggaagtctactcgtgccacctctc 235377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 490 - 530
Alignment:
Q  20 tcaagtgtcactatcatctccccaaacggaagatggaagct 60  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  490 tcaagtgtcactatcatctcccaaatcggaagatggaagct 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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