View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18633_low_27 (Length: 242)
Name: NF18633_low_27
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_27 |
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| [»] scaffold0248 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31783967 - 31784194
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31783967 |
aaaattatgtgaacaaggtcatgaaatgtaactatctcaaaggtacttggaaaaataagcttctgttatgtaaaagaaacaagcttctaaagagctacca |
31784066 |
T |
|
| Q |
101 |
aaacaaacttcaagtacacaattcacaattattgtactacattcactacacaattattgatttgttgtaaggaactaattttccaatgcacgtttagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31784067 |
aaacaaacttcaagtacacaattcacgattattctactacaatcactacacaattattgagttgttgtaaggaactaattttccaatgcacgtttagcat |
31784166 |
T |
|
| Q |
201 |
tctccaacgctgtcttggctgcaatttg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
31784167 |
tctccaacgctgtcttggctgcaatttg |
31784194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32802509 - 32802282
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32802509 |
aaaattatgtgaacaaggtcatgaaatgtaactatctcaaaggtacttagaaaaataagcttctgttatataaaagaaacaagctactaaagagctacca |
32802410 |
T |
|
| Q |
101 |
aaacaaacttcaagtacacaattcacaattattgtactacattcactacacaattattgatttgttgtaaggaactaattttccaatgcacgtttagcat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
32802409 |
aaacaaacttcgagtacacaattcacaattattctacttcattcactacacaattattgagttgttgaaaggaactaattttccaatgcacgtttagcat |
32802310 |
T |
|
| Q |
201 |
tctccaacgctgtcttggctgcaatttg |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| |
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| T |
32802309 |
tctccaacgctgtcttggctgaaatttg |
32802282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37391937 - 37391722
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||| |||| ||||| |||| |||| |||||||||||||||| ||||| |||||||||||| |
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| T |
37391937 |
aaaattatgtaaacaagatcatgacatgtaactatctcaaaggaacttagaaaaataaggttctattatataaaagaaacatgcttcaaaagagctacca |
37391838 |
T |
|
| Q |
101 |
aaacaaacttcaagtacacaattcacaattattgtactacattcactacacaattattgatttgttgtaaggaactaattttccaatgcacgtttagcat |
200 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
37391837 |
aaacaaaatacaagtacacaattcacagttatt---ctacat-----------ttattgagttgttgtaaggaaataattttccaatgcacgttaagcat |
37391752 |
T |
|
| Q |
201 |
tctccaacgctgtcttggctgcaatttgat |
230 |
Q |
| |
|
||||||| | |||| || |||||||||||| |
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|
| T |
37391751 |
tctccaatgttgtcctgactgcaatttgat |
37391722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 3684 - 3583
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3684 |
aaaattatgtgaacaaggtcatgaaatgtaaccatctcaaaggtacttagaaaaataagcttctgttatataaaagaaacgggcttctaaagagctacca |
3585 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
|
|| |
|
|
| T |
3584 |
aa |
3583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1537555 - 1537454
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1537555 |
aaaattatgtgaacaaggtcatgaaatgtaaccatctcaaaggtacttagaaaaataagcttctgttatataaaagaaacgggcttctaaagagctacca |
1537456 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
|
|| |
|
|
| T |
1537455 |
aa |
1537454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17767602 - 17767501
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17767602 |
aaaattatgtgaacaaggtcatgaaatgtaaccatctcaaaggtacttagaaaaataagcttctgttatataaaagaaacgggcttctaaagagctacca |
17767503 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
|
|| |
|
|
| T |
17767502 |
aa |
17767501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 273157 - 273256
Alignment:
| Q |
1 |
aaaattatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctacca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
273157 |
aaaattatgtgaacaagggcatgaaatgtaaccatctcaaaggtacttagaaaaataagcttctgttatataaaagaaacgggcttctaaagagctacca |
273256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 32595826 - 32595940
Alignment:
| Q |
110 |
tcaagtacacaattcacaattattgtactacattcactacacaattattgatttgttgtaaggaactaattttccaatgcacgtttagcattctccaacg |
209 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||| ||||||| || |||||| |||| |||||||||||||||||||| ||||||| | |
|
|
| T |
32595826 |
tcaagtacacagttcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtg |
32595925 |
T |
|
| Q |
210 |
ctgtcttggctgcaa |
224 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
32595926 |
ctgtcctggctgcaa |
32595940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 32600431 - 32600531
Alignment:
| Q |
124 |
cacaattattgtactacattcactacacaattattgatttgttgtaaggaactaattttccaatgcacgtttagcattctccaacgctgtcttggctgca |
223 |
Q |
| |
|
|||||||||| |||||||||| || ||| ||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
32600431 |
cacaattattctactacattccctttacagttattgagttgttgaaagccactaattttccaacgcacgtttagccttctccagtgctgtcctggctgca |
32600530 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
32600531 |
a |
32600531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 23911089 - 23911187
Alignment:
| Q |
5 |
ttatgtgaacaagttcatgaaatgtaactatctcaaaggtactttgaaaattaagcttctgttatataaaagaaacaagcttctaaagagctaccaaaa |
103 |
Q |
| |
|
||||||||| ||| |||| ||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23911089 |
ttatgtgaataaggccatggcatgcaactatctcaaaggtactaagaaaaacaagcttctgttacataaaagaaacaagcttctaaagagctaccaaaa |
23911187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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