View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_28 (Length: 241)
Name: NF18633_low_28
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 10130537 - 10130760
Alignment:
| Q |
18 |
gtacctggtaaactcttcaatgtacccattatttgagaagttgaaccatgttcatcactcttcttcttcttacataaataataataccaaaatccaccac |
117 |
Q |
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| T |
10130537 |
gtacctggtaaactcttcaatgtacccattatttgagaagttgaaccatgttcatcactcttcttcttcttacataaataataataccaaaatccaccac |
10130636 |
T |
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| Q |
118 |
cagctaaaatcaaaaccaatactggaatcccaacacctaaaccaatactcaaannnnnnnnnnnnnnattattatcaaacacttccattgaaatattcca |
217 |
Q |
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| T |
10130637 |
cagctaaaatcaaaaccaatactggaatcccaacacctaaaccaatactcaaatttttttcatttttattattatcaaacacttccattgaaatattcca |
10130736 |
T |
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| Q |
218 |
tctaagtacacagtttaactcaac |
241 |
Q |
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| T |
10130737 |
tctaagtacacagtttaactcaac |
10130760 |
T |
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