View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_29 (Length: 237)
Name: NF18633_low_29
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_29 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 3217025 - 3217244
Alignment:
| Q |
18 |
attcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217025 |
attcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgag |
3217124 |
T |
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| Q |
118 |
ttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtcaatttcacggcgaatcc |
217 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217125 |
ttgtatgtaatgagaggatgttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtcaatttcacggcgaatcc |
3217224 |
T |
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| Q |
218 |
attcatgacgttttggtatg |
237 |
Q |
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|||||||||||||||||||| |
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| T |
3217225 |
attcatgacgttttggtatg |
3217244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 3203103 - 3203303
Alignment:
| Q |
18 |
attcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgag |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
3203103 |
attcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgag |
3203202 |
T |
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| Q |
118 |
ttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtcaatttcacggcgaatcc |
217 |
Q |
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|||| |||||||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
3203203 |
ttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttcttccggggtcaatttcacggcaaatcc |
3203302 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
3203303 |
a |
3203303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 3209077 - 3209278
Alignment:
| Q |
18 |
attcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgag |
117 |
Q |
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||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| || ||||| | ||||| |||||||||||||||| ||||||| |
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| T |
3209077 |
attcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgag |
3209176 |
T |
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| Q |
118 |
ttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtcaatttcacggcgaatcc |
217 |
Q |
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|||| ||||||||| || || || | ||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
3209177 |
ttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttcctccggggtcaatttcacggcgaatcc |
3209276 |
T |
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| Q |
218 |
at |
219 |
Q |
| |
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|| |
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| T |
3209277 |
at |
3209278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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