View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18633_low_3 (Length: 552)

Name: NF18633_low_3
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18633_low_3
NF18633_low_3
[»] chr1 (45 HSPs)
chr1 (11-526)||(2218006-2218521)
chr1 (393-494)||(2225690-2225791)
chr1 (269-352)||(22881567-22881650)
chr1 (269-348)||(48040418-48040495)
chr1 (269-353)||(113324-113413)
chr1 (302-350)||(16297223-16297271)
chr1 (269-352)||(35919226-35919310)
chr1 (292-351)||(10233313-10233374)
chr1 (270-352)||(37055807-37055889)
chr1 (303-352)||(6427545-6427594)
chr1 (316-353)||(16812639-16812676)
chr1 (303-352)||(37598901-37598950)
chr1 (304-352)||(1815328-1815376)
chr1 (269-301)||(22515889-22515921)
chr1 (269-309)||(24577180-24577220)
chr1 (302-350)||(42359391-42359439)
chr1 (306-353)||(18556384-18556431)
chr1 (268-307)||(26526752-26526791)
chr1 (304-351)||(40258874-40258921)
chr1 (270-301)||(41877472-41877503)
chr1 (307-353)||(6574051-6574097)
chr1 (302-352)||(15765827-15765877)
chr1 (318-352)||(31694639-31694673)
chr1 (269-307)||(47989522-47989560)
chr1 (270-307)||(6612167-6612204)
chr1 (303-352)||(9828125-9828174)
chr1 (303-352)||(18337399-18337448)
chr1 (270-303)||(21378604-21378637)
chr1 (269-306)||(25272507-25272544)
chr1 (316-353)||(35702541-35702578)
chr1 (303-352)||(40917830-40917879)
chr1 (272-301)||(46348385-46348414)
chr1 (316-353)||(47989591-47989628)
chr1 (269-313)||(1486699-1486743)
chr1 (269-301)||(1815282-1815314)
chr1 (162-230)||(2225586-2225654)
chr1 (302-350)||(11412709-11412757)
chr1 (269-301)||(15449234-15449266)
chr1 (269-301)||(18337354-18337386)
chr1 (317-353)||(22515826-22515862)
chr1 (316-352)||(22947813-22947849)
chr1 (316-352)||(30359448-30359484)
chr1 (269-301)||(40258935-40258967)
chr1 (270-298)||(48450592-48450620)
chr1 (269-301)||(51410050-51410082)
[»] scaffold0020 (1 HSPs)
scaffold0020 (269-353)||(135262-135346)
[»] chr7 (32 HSPs)
chr7 (269-345)||(18215144-18215220)
chr7 (302-352)||(1433528-1433578)
chr7 (269-307)||(2334275-2334313)
chr7 (303-353)||(7133211-7133261)
chr7 (306-352)||(24339726-24339772)
chr7 (303-352)||(5409771-5409820)
chr7 (303-352)||(29763129-29763178)
chr7 (269-301)||(9408336-9408368)
chr7 (304-352)||(21880223-21880271)
chr7 (269-352)||(35861989-35862070)
chr7 (304-351)||(20549862-20549909)
chr7 (303-353)||(6490786-6490836)
chr7 (269-307)||(15902847-15902885)
chr7 (269-307)||(18039024-18039062)
chr7 (269-307)||(24339667-24339705)
chr7 (270-352)||(28155596-28155673)
chr7 (303-352)||(598278-598327)
chr7 (303-352)||(9778575-9778624)
chr7 (270-307)||(27945067-27945104)
chr7 (303-352)||(30813867-30813916)
chr7 (303-352)||(43027404-43027453)
chr7 (269-313)||(5233654-5233698)
chr7 (308-352)||(5307331-5307375)
chr7 (269-313)||(5409826-5409870)
chr7 (308-352)||(7438792-7438836)
chr7 (269-313)||(9778525-9778569)
chr7 (269-301)||(11061078-11061110)
chr7 (269-301)||(15680834-15680866)
chr7 (269-301)||(21560528-21560560)
chr7 (269-313)||(32094010-32094054)
chr7 (303-351)||(32287404-32287452)
chr7 (303-347)||(43250074-43250118)
[»] chr6 (31 HSPs)
chr6 (269-349)||(9025448-9025528)
chr6 (269-352)||(8805524-8805606)
chr6 (269-352)||(9911482-9911562)
chr6 (269-351)||(31959184-31959268)
chr6 (269-352)||(7086820-7086904)
chr6 (304-352)||(10339054-10339102)
chr6 (269-351)||(17841530-17841623)
chr6 (302-352)||(9107299-9107349)
chr6 (269-307)||(9522916-9522954)
chr6 (303-352)||(8365448-8365497)
chr6 (270-307)||(21395304-21395341)
chr6 (316-352)||(426478-426514)
chr6 (304-352)||(4878014-4878061)
chr6 (272-352)||(7938144-7938219)
chr6 (269-313)||(10770664-10770708)
chr6 (269-352)||(9027203-9027286)
chr6 (302-352)||(10294187-10294237)
chr6 (269-307)||(16766722-16766760)
chr6 (304-353)||(13360312-13360361)
chr6 (303-352)||(17327590-17327639)
chr6 (268-301)||(32978901-32978934)
chr6 (269-301)||(403866-403898)
chr6 (269-301)||(3209407-3209439)
chr6 (318-350)||(5569834-5569866)
chr6 (316-352)||(10770607-10770643)
chr6 (302-338)||(21044828-21044864)
chr6 (302-338)||(21068086-21068122)
chr6 (270-306)||(25038068-25038104)
chr6 (269-301)||(28152123-28152155)
chr6 (269-301)||(34595159-34595191)
chr6 (304-352)||(34894968-34895016)
[»] scaffold0009 (1 HSPs)
scaffold0009 (279-345)||(188446-188512)
[»] chr8 (27 HSPs)
chr8 (269-352)||(8342997-8343086)
chr8 (304-352)||(18407790-18407838)
chr8 (269-352)||(25566866-25566949)
chr8 (269-307)||(2572052-2572090)
chr8 (303-352)||(36450694-36450743)
chr8 (269-301)||(20873094-20873126)
chr8 (303-350)||(44067597-44067644)
chr8 (302-352)||(22652056-22652106)
chr8 (302-352)||(30067968-30068018)
chr8 (228-269)||(4298955-4298996)
chr8 (303-352)||(12570438-12570487)
chr8 (303-352)||(12570664-12570713)
chr8 (269-306)||(15816126-15816163)
chr8 (302-351)||(29447040-29447089)
chr8 (303-352)||(29510233-29510282)
chr8 (316-353)||(37283754-37283791)
chr8 (269-301)||(4298888-4298920)
chr8 (269-301)||(4948677-4948709)
chr8 (269-301)||(8343341-8343373)
chr8 (270-306)||(16867202-16867238)
chr8 (307-355)||(17751730-17751778)
chr8 (307-355)||(17760717-17760765)
chr8 (269-301)||(22197744-22197776)
chr8 (269-301)||(24613545-24613577)
chr8 (316-352)||(26902104-26902140)
chr8 (303-359)||(34450954-34451010)
chr8 (269-301)||(40332216-40332248)
[»] chr4 (34 HSPs)
chr4 (302-352)||(18513175-18513225)
chr4 (303-350)||(22440559-22440606)
chr4 (269-352)||(11596297-11596386)
chr4 (270-352)||(37203290-37203371)
chr4 (269-352)||(42640554-42640643)
chr4 (303-354)||(23292924-23292975)
chr4 (281-351)||(24544019-24544088)
chr4 (303-349)||(28084594-28084640)
chr4 (303-352)||(24343583-24343632)
chr4 (304-352)||(715545-715593)
chr4 (304-352)||(752871-752919)
chr4 (303-351)||(3947702-3947750)
chr4 (269-301)||(6485613-6485645)
chr4 (303-351)||(14465006-14465054)
chr4 (304-352)||(16073465-16073513)
chr4 (304-352)||(29205539-29205587)
chr4 (303-351)||(40965341-40965389)
chr4 (304-351)||(5922532-5922579)
chr4 (306-353)||(28964187-28964234)
chr4 (272-306)||(16303263-16303297)
chr4 (269-303)||(29205469-29205503)
chr4 (270-307)||(11797624-11797661)
chr4 (302-351)||(17425348-17425397)
chr4 (303-352)||(19482749-19482798)
chr4 (304-352)||(3064868-3064916)
chr4 (303-347)||(3712458-3712502)
chr4 (269-301)||(4157174-4157206)
chr4 (269-301)||(4157461-4157493)
chr4 (316-352)||(5775304-5775340)
chr4 (269-301)||(6879467-6879499)
chr4 (269-301)||(12797340-12797372)
chr4 (304-352)||(16184902-16184950)
chr4 (269-301)||(35157987-35158019)
chr4 (320-352)||(42015047-42015079)
[»] chr3 (21 HSPs)
chr3 (269-352)||(11610546-11610628)
chr3 (302-353)||(34185051-34185102)
chr3 (269-350)||(25775534-25775624)
chr3 (270-352)||(4990912-4991000)
chr3 (303-352)||(41961579-41961628)
chr3 (269-301)||(1509564-1509596)
chr3 (269-313)||(27505271-27505315)
chr3 (269-352)||(55401100-55401194)
chr3 (270-352)||(20503491-20503584)
chr3 (303-350)||(24204983-24205030)
chr3 (279-351)||(25211574-25211648)
chr3 (302-351)||(1389907-1389956)
chr3 (303-352)||(25074865-25074914)
chr3 (303-352)||(27505321-27505370)
chr3 (303-352)||(40052382-40052431)
chr3 (269-301)||(8587023-8587055)
chr3 (269-301)||(10268488-10268520)
chr3 (269-301)||(28918026-28918058)
chr3 (269-309)||(39756261-39756301)
chr3 (304-352)||(40993275-40993323)
chr3 (269-301)||(55212988-55213020)
[»] chr2 (20 HSPs)
chr2 (303-352)||(26769592-26769641)
chr2 (303-352)||(37419824-37419873)
chr2 (273-352)||(44635527-44635612)
chr2 (316-352)||(11223793-11223829)
chr2 (303-351)||(28596539-28596587)
chr2 (269-350)||(2438661-2438753)
chr2 (432-490)||(9994741-9994799)
chr2 (302-352)||(10535685-10535735)
chr2 (302-352)||(24975255-24975305)
chr2 (302-352)||(32749754-32749804)
chr2 (318-352)||(35056964-35056998)
chr2 (303-353)||(38117098-38117148)
chr2 (272-301)||(14996225-14996254)
chr2 (304-353)||(18840952-18841001)
chr2 (272-301)||(20539676-20539705)
chr2 (303-348)||(37411188-37411233)
chr2 (303-352)||(42511322-42511371)
chr2 (269-301)||(18421988-18422020)
chr2 (269-301)||(19536399-19536431)
chr2 (316-352)||(39323321-39323357)
[»] chr5 (25 HSPs)
chr5 (292-352)||(2436970-2437030)
chr5 (269-352)||(15884013-15884096)
chr5 (270-353)||(24906251-24906334)
chr5 (302-349)||(39268541-39268588)
chr5 (303-357)||(42893430-42893484)
chr5 (303-352)||(21576685-21576734)
chr5 (303-352)||(32766872-32766921)
chr5 (304-352)||(19820328-19820376)
chr5 (269-350)||(21351852-21351939)
chr5 (269-301)||(33178050-33178082)
chr5 (269-307)||(19579726-19579764)
chr5 (269-298)||(14674294-14674323)
chr5 (303-352)||(14873592-14873641)
chr5 (316-353)||(17123130-17123167)
chr5 (270-307)||(21542056-21542093)
chr5 (303-352)||(31084398-31084447)
chr5 (316-353)||(35017126-35017163)
chr5 (269-301)||(6247647-6247679)
chr5 (316-352)||(10298633-10298669)
chr5 (304-352)||(19552476-19552524)
chr5 (269-301)||(21191058-21191090)
chr5 (316-352)||(22423764-22423800)
chr5 (302-350)||(23015926-23015974)
chr5 (317-353)||(39698636-39698672)
chr5 (269-301)||(43564906-43564938)
[»] scaffold0793 (1 HSPs)
scaffold0793 (304-352)||(4821-4869)
[»] scaffold0011 (1 HSPs)
scaffold0011 (269-301)||(17751-17783)
[»] scaffold0475 (1 HSPs)
scaffold0475 (309-352)||(3384-3427)
[»] scaffold0057 (1 HSPs)
scaffold0057 (302-352)||(24106-24155)
[»] scaffold0450 (1 HSPs)
scaffold0450 (303-352)||(8564-8613)
[»] scaffold0380 (1 HSPs)
scaffold0380 (303-352)||(8671-8720)
[»] scaffold0236 (1 HSPs)
scaffold0236 (269-306)||(25765-25802)
[»] scaffold0053 (1 HSPs)
scaffold0053 (303-352)||(8868-8917)
[»] scaffold0025 (1 HSPs)
scaffold0025 (269-306)||(23795-23832)
[»] scaffold0003 (1 HSPs)
scaffold0003 (303-352)||(241675-241724)
[»] scaffold0652 (1 HSPs)
scaffold0652 (303-351)||(403-451)
[»] scaffold0171 (2 HSPs)
scaffold0171 (230-266)||(23371-23407)
scaffold0171 (269-313)||(23445-23489)
[»] scaffold0027 (1 HSPs)
scaffold0027 (317-353)||(46741-46777)
[»] scaffold0004 (1 HSPs)
scaffold0004 (269-301)||(123653-123685)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 2218006 - 2218521
Alignment:
Q  11 cacagagaacatatgcaaaataagggatttgtctcctcaaaagtgagcaattcattttacaatttaaggatgaacaaatcaaccattgatattataaatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2218006 cacagagaacatatgcaaaataagggatttgtctcctcaaaagtgagcaattcattttacaacttaaggatgaacaaatcaaccattgatattataaatc 2218105  T
Q  111 ataaattagttaattacttttaaactgagaattcaatgtaaaagaagaaatcaaatcatggcctagtctccgttaaaagtccaaagatataaaatgaaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218106 ataaattagttaattacttttaaactgagaattcaatgtaaaagaagaaatcaaatcatggcctagtctccgttaaaagtccaaagatataaaatgaaca 2218205  T
Q  211 tccataaataatgtagcacctatgaagcacggatacgaacacgaacacgacacagatacacataatttagtgtaattacaagtgtcggtgttgtgtccga 310  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2218206 accataaataatgtagcacctatgaagcacggatacggacacgaacacgacacagatacacataatttagtgtaattacaagtgtcggtgtcgtgtccga 2218305  T
Q  311 cactaggacacgcctaatctgaggagtgcccgtgcttcatagtgtagcaacaacagtttggattaaagacatcttcggtgtaaaacatgtgatggtaagt 410  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2218306 cactaggacacgcctaatctgaggagtgtccgtgcttcatagtgtagcaacaacactttggattaaagacatcttcggtgtaaaacatgtgatggtaagt 2218405  T
Q  411 cagtatacacaacaccaaccctgacacaacaccgacacatgtgaccatattcaactattcaattctctcaaacaattacttatcagtatcgatatgtcag 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2218406 cagtatacacaacaccaaccctgacacaacaccgacacatgtgaccatattcaactattcaattctctcaaactattacttatcagtatcgatatgtcag 2218505  T
Q  511 tgtccgcgtgtgtgtg 526  Q
    ||||||||||||||||    
T  2218506 tgtccgcgtgtgtgtg 2218521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 393 - 494
Target Start/End: Original strand, 2225690 - 2225791
Alignment:
Q  393 aaacatgtgatggtaagtcagtatacacaacaccaaccctgacacaacaccgacacatgtgaccatattcaactattcaattctctcaaacaattactta 492  Q
    ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||||| ||||||||||||||||||||||| |||||||| |||| |||    
T  2225690 aaacatgtgttggtaagtcagtatacacaataccaagcccgacaccacgccgacacatttgaccatattcaactattcaattttctcaaactattaatta 2225789  T
Q  493 tc 494  Q
    ||    
T  2225790 tc 2225791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 22881650 - 22881567
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||||||||||||| |    ||||||  ||||||| |||||| |||||||| |||||||||||||    
T  22881650 cacataatttagtgtaattacaagtgtcggtgtcggacacgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 48040495 - 48040418
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttc 348  Q
    |||||| |||||||||| |||||||||||||   |||||||||||| |||||||||||||  |||||||| |||||||||    
T  48040495 cacatattttagtgtaaatacaagtgtcggtc--gtgtccgacactgggacacgcctaattggaggagtgtccgtgcttc 48040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 113324 - 113413
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc-----cgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||| ||||||||||||||||| ||||| |||||     | ||||  |||||||||||||| ||||||||||| |||||||||||    
T  113324 cacataattcagtgtaattacaagtgtaggtgtcgtgtcgtgtccaacaccgggacacgcctaatccgaggagtgcccatgcttcatagt 113413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 16297271 - 16297223
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  16297271 tgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 35919310 - 35919226
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactagg-acacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| |||||||||| ||||||| |||| ||||| |||||  || |||||||||||| ||||| || |||||||||||||    
T  35919310 cacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggactgtccgtgcttcatag 35919226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 10233313 - 10233374
Alignment:
Q  292 gtgtcggtgt--tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||||  |||||||||||| ||||||| ||||||| |||||||| ||||||||||||    
T  10233313 gtgtcggtgtcatgtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 37055889 - 37055807
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||||||||||||| || || | ||||  |||||  |||||||||||||||  |||||| |||||| ||||||    
T  37055889 acataatttagtgtaattacaagtatcagtatcgtgtgtgacacctggacacgcctaatctacggagtggccgtgcatcatag 37055807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 6427545 - 6427594
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||||||||||||||| ||||| |||||||||||||    
T  6427545 gtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 16812639 - 16812676
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16812639 ggacacgcctaatctgaggagtgtccgtgcttcatagt 16812676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 37598901 - 37598950
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||| | |||||||||||||| |||||||| |||||||||||||    
T  37598901 gtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 1815328 - 1815376
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  1815328 tgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatag 1815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 22515921 - 22515889
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  22515921 cacataatttagtgtaattacaagtgtcggtgt 22515889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 24577220 - 24577180
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccg 309  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  24577220 cacataattcagtgtaattacaagtgtcggtgtcgtgtccg 24577180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 42359439 - 42359391
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||||  |||||||||||||| |||||||| |||||||||||    
T  42359439 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 18556431 - 18556384
Alignment:
Q  306 tccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||| |||||||||||||| ||| |||| ||||||||||||||    
T  18556431 tccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagt 18556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 26526791 - 26526752
Alignment:
Q  268 acacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  26526791 acacataatttaatataattacaagtgtcggtgttgtgtc 26526752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 40258921 - 40258874
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||| ||||||||||||||| |||||||| || |||||||||    
T  40258921 tgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 301
Target Start/End: Complemental strand, 41877503 - 41877472
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||||||||||||||||||||    
T  41877503 acataatttagtgtaattacaagtgtcggtgt 41877472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 6574051 - 6574097
Alignment:
Q  307 ccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  6574051 ccgacactgggacacgcctaatccaaggagtgaccgtgcttcatagt 6574097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 15765827 - 15765877
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||| |||||| |||||||||||||| || ||||| |||||||||||||    
T  15765827 tgtgtctgacactgggacacgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 31694673 - 31694639
Alignment:
Q  318 acacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||| |||||||||||||    
T  31694673 acacgcctaatctgaggagtgtccgtgcttcatag 31694639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 47989522 - 47989560
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  47989522 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 47989560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 6612204 - 6612167
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtc 6612167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 9828125 - 9828174
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||||| |||||| |||||||| |||||||||||||    
T  9828125 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 18337399 - 18337448
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| ||||| |||| ||| |||||||| |||||||||||||    
T  18337399 gtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 21378604 - 21378637
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  21378604 acataattcagtgtaattacaagtgtcggtgttg 21378637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 25272507 - 25272544
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  25272507 cacataatttagtgtaattataagtgtcggtgtcgtgt 25272544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 35702578 - 35702541
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  35702578 ggacacgcctaatccgaggagtgtccgtgcttcatagt 35702541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 40917830 - 40917879
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| ||||| || |||||||||||||    
T  40917830 gtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 46348414 - 46348385
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||||||||||||||||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgt 46348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 47989591 - 47989628
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  47989591 ggacacgcctaatccgaggagtgtccgtgcttcatagt 47989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 1486743 - 1486699
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| |||||||||| |||||||||||| ||||| |||||    
T  1486743 cacataattcagtgtaattataagtgtcggtgtcgtgtcggacac 1486699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 1815282 - 1815314
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  1815282 cacataattcagtgtaattacaagtgtcggtgt 1815314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 2225586 - 2225654
Alignment:
Q  162 caaatcatggcctagtctccgttaaaagtccaaagatataaaatgaacatccataaataatgtagcacc 230  Q
    ||||||| |||||||||||  ||||||||||||| | |||| || |||| | ||||| |||||||||||    
T  2225586 caaatcaaggcctagtctctattaaaagtccaaataaataacataaacagctataaacaatgtagcacc 2225654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 11412757 - 11412709
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||||||||||| |||| |||  ||||||| |||||||||||    
T  11412757 tgtgtccgacactaggacatgccttatcctaggagtgtccgtgcttcat 11412709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 15449266 - 15449234
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||| ||||    
T  15449266 cacataatttagtgtaattacaagtgtctgtgt 15449234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 18337354 - 18337386
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  18337354 cacataattcagtgtaattacaagtgtcggtgt 18337386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 22515862 - 22515826
Alignment:
Q  317 gacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22515862 gacacgcctaatccgaggagtgtccgtgcttcatagt 22515826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 22947813 - 22947849
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||| |||||||| |||||||||||||    
T  22947813 ggacacgcctaatccgaggagtgtccgtgcttcatag 22947849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 30359448 - 30359484
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  30359448 ggacacgccaaatctgaggagtgtccgtgcttcatag 30359484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 40258967 - 40258935
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  40258967 cacataattcagtgtaattacaagtgtcggtgt 40258935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 48450620 - 48450592
Alignment:
Q  270 acataatttagtgtaattacaagtgtcgg 298  Q
    |||||||||||||||||||||||||||||    
T  48450620 acataatttagtgtaattacaagtgtcgg 48450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 51410050 - 51410082
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  51410050 cacataattcagtgtaattacaagtgtcggtgt 51410082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 135346 - 135262
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||  ||||||||| | |||||||||| ||||||||||| |||||||||||||||||||| |||  |||||||||||||    
T  135346 cacataattctgtgtaattatatgtgtcggtgtcgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatagt 135262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 18215220 - 18215144
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgc 345  Q
    ||||||||  |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||    
T  18215220 cacataatgcagtgtagttacaagtgtcggtgtcgtgtccgacaccgggacacgcctaatctgaggagtgtccgtgc 18215144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 1433528 - 1433578
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  1433528 tgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 2334275 - 2334313
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2334275 cacataatttagtgtaattacaagtgtcggtgtcgtgtc 2334313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 7133261 - 7133211
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  7133261 gtgtccgacactgggacacacctaatctgaggagcgtccgtgcttcatagt 7133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 24339726 - 24339772
Alignment:
Q  306 tccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  24339726 tccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 5409820 - 5409771
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 29763178 - 29763129
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  ||||||||||||||| |||||||| |||||||||||||    
T  29763178 gtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 9408368 - 9408336
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  9408368 cacataatttagtgtaattacaagtgtcggtgt 9408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 21880223 - 21880271
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||| ||||||||||||||| ||| |||| |||||||||||||    
T  21880223 tgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 35861989 - 35862070
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| | |||||||  ||||||| |||| ||  | ||||| ||||||||||||||| |||||||| |||||||||||||    
T  35861989 cacataattcaatgtaattgtaagtgtctgtgtcgt--cggacacgaggacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 20549862 - 20549909
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||| |  ||||||||||||| |||||||||||||||||||||    
T  20549862 tgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 6490786 - 6490836
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||  |||||||| ||||| |||||||| ||||||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatagt 6490836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 15902847 - 15902885
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  15902847 cacataatttagtgtaattatatgtgtcggtgttgtgtc 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 18039024 - 18039062
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  18039024 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 18039062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 24339667 - 24339705
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  24339667 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 24339705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 28155596 - 28155673
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||  |||||||||||||||||||||| |     ||||| |||||||||||||||  |||| || |||||||||||||    
T  28155596 acataattcggtgtaattacaagtgtcggtgtcg-----gacaccaggacacgcctaatccaaggaatgtccgtgcttcatag 28155673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 598278 - 598327
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| ||| |||| |||||||||||||    
T  598278 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 9778575 - 9778624
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||||||||||||  ||||||| |||||||||||||    
T  9778575 gtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 27945067 - 27945104
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 30813867 - 30813916
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  || |||||||||||| |||||||| |||||||||||||    
T  30813867 gtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 43027453 - 43027404
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| || ||||| |||||||||||||    
T  43027453 gtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 5233654 - 5233698
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    |||||||| ||||||||||| | |||| |||||||||||||||||    
T  5233654 cacataatctagtgtaattatatgtgttggtgttgtgtccgacac 5233698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 5307331 - 5307375
Alignment:
Q  308 cgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||  |||||||  ||||||||||||    
T  5307331 cgacactaggacacgcctaatccaaggagtgtacgtgcttcatag 5307375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 5409870 - 5409826
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| |||| |||||||||||||||||| ||||| |||||    
T  5409870 cacataattcagtgcaattacaagtgtcggtgtcgtgtcggacac 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 7438792 - 7438836
Alignment:
Q  308 cgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||||||||||   ||||||| |||||||||||||    
T  7438792 cgacactaggacacgcctaattcaaggagtgtccgtgcttcatag 7438836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 9778525 - 9778569
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  9778525 cacataattcagtataattacaagtgtcggtgtcgtgtcggacac 9778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 11061110 - 11061078
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||| |||||||||||||||||||    
T  11061110 cacataatttagtataattacaagtgtcggtgt 11061078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 15680834 - 15680866
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||| ||||||||||||    
T  15680834 cacataatttagtgtaattataagtgtcggtgt 15680866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 21560528 - 21560560
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  21560528 cacataattcagtgtaattacaagtgtcggtgt 21560560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 32094054 - 32094010
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| ||||||||||||| ||||||||| ||||| |||||    
T  32094054 cacataattcagtgtaattacaaatgtcggtgtcgtgtcggacac 32094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||||  |||||| ||||||| |||||||| ||||||||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 43250074 - 43250118
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgctt 347  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||    
T  43250074 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 9025528 - 9025448
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttca 349  Q
    ||||||||| |||||||||| | |||||||||| |||||||||||  |||||||||||||| ||| |||| ||||||||||    
T  9025528 cacataattcagtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 8805606 - 8805524
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac-taggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||   |||||||||| ||||| ||||| | ||||| |||||||| |||||||| |||||||||||||    
T  8805606 cacataatttagtgtaattat--gtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 9911562 - 9911482
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||||||||||||| |||||    || ||||||||||||||| ||||||||  | ||||||||||    
T  9911562 cacataattcagtgtaattacaagtgtcggtgtcgtgtc---aaccaggacacgcctaatccgaggagtgttcatgcttcatag 9911482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 31959184 - 31959268
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt--tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||  |||||||||||||||||||| |   ||||||||||||  |||||| ||||||| |||||||| ||||||||||||    
T  31959184 cacataatgcagtgtaattacaagtgtcggcgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 7086820 - 7086904
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac-taggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||||||||| | |||||||||| ||||| ||||| |  |||| |||||||| |||||||  |||||||||||||    
T  7086820 cacataatttagtgtaattatatgtgtcggtgtagtgtcagacacgtgagacatgcctaatccgaggagtttccgtgcttcatag 7086904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 10339102 - 10339054
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  10339102 tgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 17841623 - 17841530
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt-----------tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||||||||||||||||||| ||||||           |||||||||||||  ||||||||||||| |||||||| ||||||||||||    
T  17841623 cacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 9107349 - 9107299
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||  |||||| ||||||| ||||||||||||||||||||||    
T  9107349 tgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatag 9107299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 9522916 - 9522954
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  9522916 cacataattcagtgtaattacaagtgtcggtgttgtgtc 9522954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 8365497 - 8365448
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||||||||||| |||||||  |||||||||||||    
T  8365497 gtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 21395341 - 21395304
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtc 21395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 426514 - 426478
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||| |||||||||||||    
T  426514 ggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 4878014 - 4878061
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  4878014 tgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 7938144 - 7938219
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||| ||||||||||||     |||||||   ||||||||| ||| |||||||| |||||||||||||    
T  7938144 ataatttagtgtaattataagtgtcggtgt-----ccgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 10770708 - 10770664
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||    
T  10770708 cacataattcagtgtaattacaagtgtcggtgtcgtgtcagacac 10770664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 9027203 - 9027286
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||  ||||||||| | |||||||||| |||||||||||  ||||||| ||||||  |||||||   |||||||||||    
T  9027203 cacataattccgtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 10294187 - 10294237
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||  ||||||||||||||| | |||||||||||    
T  10294187 tgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcatag 10294237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 16766722 - 16766760
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  16766722 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 13360361 - 13360312
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||  ||||||||||||| || ||||| ||||||||||||||    
T  13360361 tgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcatagt 13360312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 17327639 - 17327590
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||| |||||  |||||||||||||| |||||||| |||||||||||||    
T  17327639 gtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 32978934 - 32978901
Alignment:
Q  268 acacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||| |||||||||||||||||||||||    
T  32978934 acacataattaagtgtaattacaagtgtcggtgt 32978901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 403898 - 403866
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||||| |||||||||||||||    
T  403898 cacataatttagtgtaactacaagtgtcggtgt 403866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 3209407 - 3209439
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||| |||||||||||||||||    
T  3209407 cacataatttagtgttattacaagtgtcggtgt 3209439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 5569834 - 5569866
Alignment:
Q  318 acacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||||||||||||| |||||||||||    
T  5569834 acacgcctaatctgaggagtgtccgtgcttcat 5569866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 10770643 - 10770607
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  10770643 ggacatgcctaatctgaggagtgtccgtgcttcatag 10770607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 21044864 - 21044828
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtg 338  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  21044864 tgtgtccgacactgggacacgcctaatctaaggagtg 21044828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 21068122 - 21068086
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtg 338  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  21068122 tgtgtccgacactgggacacgcctaatctaaggagtg 21068086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 25038104 - 25038068
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  25038104 acataatttagtgtaattacaaatgtcggtattgtgt 25038068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 28152123 - 28152155
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  28152123 cacataattcagtgtaattacaagtgtcggtgt 28152155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 34595159 - 34595191
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  34595159 cacataattcagtgtaattacaagtgtcggtgt 34595191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 34895016 - 34894968
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||| |||||| ||||||||| |||||||||||||    
T  34895016 tgtccgacacagggacacacctaatatgaggagtgtccgtgcttcatag 34894968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 188446 - 188512
Alignment:
Q  279 agtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgc 345  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||||||| |||||||| ||||||    
T  188446 agtgtaataacaagtgtcggtgtcgtatccgacaccaggacacgcctaatccgaggagtgtccgtgc 188512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 8342997 - 8343086
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt------tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||||||||||||||||||||||      ||||||||||||  |||||||||||||| || ||||| | |||||||||||    
T  8342997 cacataatttagtgtaattacaagtgtcggtgtcgtacatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 18407790 - 18407838
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||    
T  18407790 tgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 25566866 - 25566949
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||||||||||||| ||||  |   |  |||||||||||||| |||||||| | |||||||||||    
T  25566866 cacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtccgggacacgcctaatccgaggagtgtctgtgcttcatag 25566949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 2572090 - 2572052
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2572090 cacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| ||||||||||||||| |||||||| | |||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 20873094 - 20873126
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  20873094 cacataatttagtgtaattacaagtgtcggtgt 20873126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 44067597 - 44067644
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  44067597 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 22652056 - 22652106
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||  ||||||| |||||| |||||||| |||||||||||||    
T  22652056 tgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 30068018 - 30067968
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||| |||||| ||||||| || ||||| |||||||||||||    
T  30068018 tgtgtccgacactgggacacacctaatccgatgagtgtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 4298996 - 4298955
Alignment:
Q  228 acctatgaagcacggatacgaacacgaacacgacacagatac 269  Q
    |||||||||||||||||| | ||||| |||||||||||||||    
T  4298996 acctatgaagcacggatatggacacggacacgacacagatac 4298955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 12570487 - 12570438
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||||||||||||||| || || |||||||| ||||    
T  12570487 gtgtccgacaccaggacacgcctaatctgaagattgtccgtgctttatag 12570438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 12570713 - 12570664
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||||||||||||||| || || |||||||| ||||    
T  12570713 gtgtccgacaccaggacacgcctaatctgaagattgtccgtgctttatag 12570664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 15816163 - 15816126
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  15816163 cacataatttagtgtaattataagtgtcggtgtcgtgt 15816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 29447089 - 29447040
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||| ||||| |||||||||||||||  ||||||| ||||||||||||    
T  29447089 tgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 29510282 - 29510233
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||| ||||||| |||||||| |||||||||||||    
T  29510282 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 37283791 - 37283754
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  37283791 ggacacgtctaatccgaggagtgcccgtgcttcatagt 37283754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 4298920 - 4298888
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||| |||||||||||||||||||||    
T  4298920 cacataatttaatgtaattacaagtgtcggtgt 4298888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 4948677 - 4948709
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  4948677 cacataattcagtgtaattacaagtgtcggtgt 4948709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 8343341 - 8343373
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||| ||||    
T  8343341 cacataatttagtgtaattacaagtgtcagtgt 8343373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 16867238 - 16867202
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  16867238 acataatttagtgtaattataagtgtcggtgtcgtgt 16867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 17751730 - 17751778
Alignment:
Q  307 ccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagtgt 355  Q
    |||||||  |||||||||||||| |||||||| ||| ||||||||||||    
T  17751730 ccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatagtgt 17751778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 17760717 - 17760765
Alignment:
Q  307 ccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagtgt 355  Q
    |||||||  |||||||||||||| |||||||| ||| ||||||||||||    
T  17760717 ccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatagtgt 17760765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 22197776 - 22197744
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||| ||||    
T  22197776 cacataatttagtgtaattacaagtgtcagtgt 22197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 24613545 - 24613577
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  24613545 cacataattaagtgtaattacaagtgtcggtgt 24613577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 26902140 - 26902104
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||| |||||||||||| |||||||||||||    
T  26902140 ggacacgccttatctgaggagtgtccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 34451010 - 34450954
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagtgtagca 359  Q
    ||||| |||||  |||||||||| |||  ||||||| ||||||||||||||||||||    
T  34451010 gtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatagtgtagca 34450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 40332216 - 40332248
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  40332216 cacataattcagtgtaattacaagtgtcggtgt 40332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 18513225 - 18513175
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  18513225 tgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 11596386 - 11596297
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc------cgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||||||| ||||| |||||      |||||   ||||||||||||||||||||||| |||||||||||||    
T  11596386 cacataattcagtgtaattacaagtgtaggtgtcgtgtcattgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 37203290 - 37203371
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||||||  |||| | |||||||||  ||||||| |||||| ||| |||| |||||||||||||    
T  37203290 acataatttagtgtaattacaagtgt-agtgtcgggtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 42640554 - 42640643
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttg------tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||||||||||||| |      |||||| ||| ||||||||||||||| |||||||  |||||||||||||    
T  42640554 cacataattcagtgtaattacaagtgtcggtgtcggacacgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcatag 42640643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 23292975 - 23292924
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagtg 354  Q
    |||||||||||  |||||||||||||| |||||||| |||||||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtg 23292924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 24544019 - 24544088
Alignment:
Q  281 tgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||||||||||||||  |||||||||||  ||||| |||||||| ||||||||| | |||||||||    
T  24544019 tgtaattacaagtgtcggtgc-gtgtccgacacatggacatgcctaatccgaggagtgctcatgcttcata 24544088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 28084594 - 28084640
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttca 349  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  28084594 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 24343583 - 24343632
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||||||||| ||||||||||| |||||||||||||    
T  24343583 gtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 715593 - 715545
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 752919 - 752871
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 3947750 - 3947702
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||||| ||||||| ||||||| |||||||| ||||||||||||    
T  3947750 gtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 6485645 - 6485613
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  6485645 cacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 14465054 - 14465006
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||| ||||||| ||||||| ||||||||||||||| ||||||||||||    
T  14465054 gtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 16073465 - 16073513
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| ||||||||||||| |||||||| || ||||||||||    
T  16073465 tgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 29205539 - 29205587
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||||||||||| ||||||||  ||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 40965341 - 40965389
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||||| | |||||||||||||||||||||| | ||||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcata 40965389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 5922579 - 5922532
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||||    
T  5922579 tgtccgacactgggacacgcctaatctgaggagtgtctctgcttcata 5922532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 28964234 - 28964187
Alignment:
Q  306 tccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||| |||||||||||||| |||||||| || |||||||||||    
T  28964234 tccgacactgggacacgcctaatccgaggagtgtccatgcttcatagt 28964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 16303297 - 16303263
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    |||||||||||||||||||||||||||||| ||||    
T  16303297 ataatttagtgtaattacaagtgtcggtgtcgtgt 16303263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 29205469 - 29205503
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  29205469 cacataattcagtgtaattacaagtgtcggtgttg 29205503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 11797661 - 11797624
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  11797661 acataatttaatgtaatcacaagtgtcggtgttgtgtc 11797624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 17425397 - 17425348
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||| ||||| ||||||||||||||| |||||||| | ||||||||||    
T  17425397 tgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 19482749 - 19482798
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||| ||||||| ||||||||  ||||||||||||    
T  19482749 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 3064916 - 3064868
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||| ||  ||||||||||||| |||||||| |||||||||||||    
T  3064916 tgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcatag 3064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 3712502 - 3712458
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgctt 347  Q
    |||||||||||  ||||||| ||||||||||||||| ||||||||    
T  3712502 gtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 4157174 - 4157206
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||| ||||||||||||||||||    
T  4157174 cacataatttagtgcaattacaagtgtcggtgt 4157206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 4157461 - 4157493
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||| ||||||||||||||||||    
T  4157461 cacataatttagtgcaattacaagtgtcggtgt 4157493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 5775340 - 5775304
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||| |||||||| |||||||||||||    
T  5775340 ggacacgcctaatccgaggagtgtccgtgcttcatag 5775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 6879499 - 6879467
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  6879499 cacataattaagtgtaattacaagtgtcggtgt 6879467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 12797372 - 12797340
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  12797372 cacataattcagtgtaattacaagtgtcggtgt 12797340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||||||||||| ||||||||   |||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 35158019 - 35157987
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||| ||||||||||||    
T  35158019 cacataatttagtgtaattataagtgtcggtgt 35157987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 42015047 - 42015079
Alignment:
Q  320 acgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||| |||||||||||||    
T  42015047 acgcctaatctgaggagtgaccgtgcttcatag 42015079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 11610546 - 11610628
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| |||||| |||||||||||   || ||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  11610546 cacataattcagtgtagttacaagtgtcaa-gtcgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 34185102 - 34185051
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||||||    
T  34185102 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagt 34185051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 25775534 - 25775624
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttg---------tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||| ||||||||||||||||||||||| |         |||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  25775534 cacataattcagtgtaattacaagtgtcggtgtcggacacgtcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 4991000 - 4990912
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgt------ccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||| |||||||||||||||||||| || ||||      | |||||  |||||||||||||| |||||||| |||||||||||||    
T  4991000 acataattcagtgtaattacaagtgtcggcgtcgtgttggtatcagacacgtggacacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 41961628 - 41961579
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||||||||||| ||| |||| |||||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 1509564 - 1509596
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  1509564 cacataatttagtgtaattacaagtgtcggtgt 1509596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 27505271 - 27505315
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||    
T  27505271 cacataattaagtgtaattacaagtgtcggtgtcgtgtctgacac 27505315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 55401100 - 55401194
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttg-----------tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||||||||||||| |           ||||||||||   ||||||||||||| |||||||| |||||||||||||    
T  55401100 cacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 20503491 - 20503584
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttg-----------tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||| |||||||||||||||||||||||||           |||| |||||  |||||||||||||| |||||||| |||||||||||||    
T  20503491 acataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 24205030 - 24204983
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  24205030 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 25211574 - 25211648
Alignment:
Q  279 agtgtaattacaagtgtcggtgttgtgtcc--gacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||| | |||||||||| ||||||  ||||| ||||||||||||||||||| ||||   ||||||||||    
T  25211574 agtgtaattatatgtgtcggtgtcgtgtccccgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 1389907 - 1389956
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||||| |||||| ||||||||  ||||||| ||||||||||||    
T  1389907 tgtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcata 1389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 25074865 - 25074914
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||| ||||||| ||||||||  ||||||||||||    
T  25074865 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 27505321 - 27505370
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||| |||||||| |||||||| |||||||||||||    
T  27505321 gtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 40052382 - 40052431
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| ||||||||  ||||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 8587055 - 8587023
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  8587055 cacataattaagtgtaattacaagtgtcggtgt 8587023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 10268520 - 10268488
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||| ||||    
T  10268520 cacataatttagtgtaattacaagtgtcagtgt 10268488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 28918026 - 28918058
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  28918026 cacataattcagtgtaattacaagtgtcggtgt 28918058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 39756261 - 39756301
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccg 309  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  39756261 cacataatttaatataattacaagtgtcggtgtcgtgtccg 39756301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 40993323 - 40993275
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||||||||||| |||||||| || ||||||||||    
T  40993323 tgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 55212988 - 55213020
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||| ||||||||||||||||||    
T  55212988 cacataatttagtgcaattacaagtgtcggtgt 55213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 26769592 - 26769641
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 37419824 - 37419873
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 44635527 - 44635612
Alignment:
Q  273 taatttagtgtaattacaagtgtcggtgttg-tgtccgacactag-----gacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||| ||||||||||||||||||||||| | |||| ||||| |      |||||||||||||||||||||| |||||||||||||    
T  44635527 taattcagtgtaattacaagtgtcggtgtcggtgtcggacacgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 11223829 - 11223793
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||||| |||||||||||||    
T  11223829 ggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 28596539 - 28596587
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||||| |||||| ||||||| |||||||| ||||||||||||    
T  28596539 gtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 2438753 - 2438661
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttg-----------tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||| ||||||||||||||||||||||| |           ||||||||||  |||||||||||||| |||||||| |||||||||||    
T  2438753 cacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 490
Target Start/End: Complemental strand, 9994799 - 9994741
Alignment:
Q  432 tgacacaacaccgacacatgtgaccatattcaactattcaattctctcaaacaattact 490  Q
    ||||||||||||||| ||||||  || ||||||||||| |||| |||||||| ||||||    
T  9994799 tgacacaacaccgacgcatgtggtcacattcaactatttaattttctcaaactattact 9994741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 10535735 - 10535685
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||| ||||| ||||||||||||||| ||||||||  ||||||||||||    
T  10535735 tgtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 24975305 - 24975255
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||| |||||   ||||||||||||||| |||||||||||||    
T  24975305 tgtgtccgacactgggacaaatctaatctgaggagtgtccgtgcttcatag 24975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 32749804 - 32749754
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| |||||||||    
T  32749804 tgtgtccgacactgggacacgccttatctaaggagtgtccgcgcttcatag 32749754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 35056964 - 35056998
Alignment:
Q  318 acacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||||||||||| |||||||||||||    
T  35056964 acacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 38117148 - 38117098
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||  |||||||||||||| |||| ||| ||||||||||||||    
T  38117148 gtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatagt 38117098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 14996254 - 14996225
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||||||||||||||||||    
T  14996254 ataatttagtgtaattacaagtgtcggtgt 14996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 18841001 - 18840952
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||  |||||| ||||||| |||||||| ||||||||||||||    
T  18841001 tgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagt 18840952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 20539705 - 20539676
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||||||||||||||||||||||||    
T  20539705 ataatttagtgtaattacaagtgtcggtgt 20539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 37411233 - 37411188
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttc 348  Q
    |||||||||||| ||||||||||| || |||||||||| |||||||    
T  37411233 gtgtccgacactgggacacgcctagtccgaggagtgcctgtgcttc 37411188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 42511371 - 42511322
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  ||||||| |||||| |||||||| |||||||||||||    
T  42511371 gtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 18421988 - 18422020
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  18421988 cacataattcagtgtaattacaagtgtcggtgt 18422020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 19536431 - 19536399
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  19536431 cacataattcagtgtaattacaagtgtcggtgt 19536399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 39323321 - 39323357
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  39323321 ggacaggcctaatctgaggagtgtccgtgcttcatag 39323357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 2436970 - 2437030
Alignment:
Q  292 gtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||| ||||||||||| | ||||||||||||| ||||||||  ||||||||||||    
T  2436970 gtgtcggtgtcgtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 15884013 - 15884096
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||| ||||||||||||||||||||||| |    ||||||| | |||||||||||| |||||||| | ||| |||||||    
T  15884013 cacataattcagtgtaattacaagtgtcggtgtcggacacgacactggaacacgcctaatccgaggagtgtctgtgtttcatag 15884096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 24906334 - 24906251
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||| ||||||||||||||||||||| | |     |||| |||||||||||||||  |||||||| ||||||||||||||    
T  24906334 acataattcagtgtaattacaagtgtcggtatcggacatgacaataggacacgcctaattcgaggagtgtccgtgcttcatagt 24906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 39268588 - 39268541
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttca 349  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  39268588 tgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 42893430 - 42893484
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatagtgtag 357  Q
    ||||||||||| |||||||||||||| ||||||||| || |||||||||| ||||    
T  42893430 gtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatagagtag 42893484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 21576734 - 21576685
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||| |||||| |||||||||||||| |||||||| |||||||||||||    
T  21576734 gtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 32766921 - 32766872
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||| ||| ||||||||||||||| |||||||||||||    
T  32766921 gtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 19820376 - 19820328
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 21351939 - 21351852
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt------tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||| |||||||||||||||||||||||       |||||||||||| | ||||| |||||| || ||||| |||||||||||    
T  21351939 cacataattcagtgtaattacaagtgtcggtgtcatgtcggtgtccgacactggaacacgtctaatccgaagagtgtccgtgcttcat 21351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 33178050 - 33178082
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  33178050 cacataatttagtgtaattacaagtgtcggtgt 33178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 19579726 - 19579764
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  19579726 cacataatttagtgcaattacaagtgtcggtgtcgtgtc 19579764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 14674294 - 14674323
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcgg 298  Q
    ||||||||||||||||||||||||||||||    
T  14674294 cacataatttagtgtaattacaagtgtcgg 14674323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 14873592 - 14873641
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||| ||||  |||||||||||||| |||||||| |||||||||||||    
T  14873592 gtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 17123130 - 17123167
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  17123130 ggacacgcctaatccgaggagtgtccgtgcttcatagt 17123167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 21542056 - 21542093
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgttgtgtc 307  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtc 21542093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 31084398 - 31084447
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| ||||| |||||||| |||||||| ||||| |||||||    
T  31084398 gtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcatag 31084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 35017126 - 35017163
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  35017126 ggacacgcctaatccgaggagtgtccgtgcttcatagt 35017163  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 6247647 - 6247679
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  6247647 cacataattcagtgtaattacaagtgtcggtgt 6247679  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 10298633 - 10298669
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||| |||||||| |||||||||||||    
T  10298633 ggacacgcctaatccgaggagtgtccgtgcttcatag 10298669  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 19552524 - 19552476
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||| |||||| ||||||| |||||||| ||||| |||||||    
T  19552524 tgtccgacacttggacacacctaatccgaggagtgtccgtgtttcatag 19552476  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 21191090 - 21191058
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  21191090 cacataattcagtgtaattacaagtgtcggtgt 21191058  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 22423800 - 22423764
Alignment:
Q  316 ggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||||| |||||||| |||||||||||||    
T  22423800 ggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 23015974 - 23015926
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcat 350  Q
    ||||||||||| | |||||||||||||| |||||||| ||| |||||||    
T  23015974 tgtgtccgacattgggacacgcctaatccgaggagtgtccgagcttcat 23015926  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 39698636 - 39698672
Alignment:
Q  317 gacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  39698636 gacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 43564906 - 43564938
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||| ||||||||||||    
T  43564906 cacataatttagtgtaattataagtgtcggtgt 43564938  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 4869 - 4821
Alignment:
Q  304 tgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 17783 - 17751
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  17783 cacataatttagtgtaattacaagtgtcggtgt 17751  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 3384 - 3427
Alignment:
Q  309 gacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||| |||||||||||||| |||||||| |||||||||||||    
T  3384 gacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 24106 - 24155
Alignment:
Q  302 tgtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    ||||||||||||| |||||||||||||| || ||||| |||||||||||||    
T  24106 tgtgtccgacact-ggacacgcctaatccgatgagtgtccgtgcttcatag 24155  T

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Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 8613 - 8564
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| | |||||||||||  |||||||| |||||||||||||    
T  8613 gtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 8671 - 8720
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||| ||| ||||||||||  ||||||| |||||||||||||    
T  8671 gtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 25802 - 25765
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  25802 cacataatttagtgtaattataagtgtcggtgtcgtgt 25765  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 8868 - 8917
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||   |||||||||||||||||||||  |||||||||||||    
T  8868 gtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 23795 - 23832
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgt 306  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  23795 cacataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 241675 - 241724
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcatag 352  Q
    |||||||||||  |||||||||||||| ||| |||| |||||||||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 451 - 403
Alignment:
Q  303 gtgtccgacactaggacacgcctaatctgaggagtgcccgtgcttcata 351  Q
    |||||||||||  |||||| ||||||| |||||||| ||||||||||||    
T  451 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 23371 - 23407
Alignment:
Q  230 ctatgaagcacggatacgaacacgaacacgacacaga 266  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23371 ctatgaagcacggatacggacacggacacgacacaga 23407  T

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Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 23445 - 23489
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgttgtgtccgacac 313  Q
    ||||||||| |||||||||| |||||||||||| ||||| |||||    
T  23445 cacataattcagtgtaattataagtgtcggtgtcgtgtcggacac 23489  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 46741 - 46777
Alignment:
Q  317 gacacgcctaatctgaggagtgcccgtgcttcatagt 353  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  46741 gacacgcctaatccgaggagtgtccgtgcttcatagt 46777  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 123653 - 123685
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  123653 cacataattcagtgtaattacaagtgtcggtgt 123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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