View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_32 (Length: 230)
Name: NF18633_low_32
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_32 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 1654183 - 1654390
Alignment:
| Q |
1 |
tgatgcggatggttttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggggcgacgaagataaggagttag |
100 |
Q |
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| T |
1654183 |
tgatgcggatggttttccatcttcgcaccaccacccaccgccgtttacattgagaaccaaagaaatttggaaagaaggggcggcagagataaggagttag |
1654282 |
T |
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| Q |
101 |
agagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaatcttattcattcat |
200 |
Q |
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| T |
1654283 |
agagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaatcttattcattcat |
1654382 |
T |
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| Q |
201 |
ggatcgtg |
208 |
Q |
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|||||||| |
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| T |
1654383 |
ggatcgtg |
1654390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15049533 - 15049437
Alignment:
| Q |
1 |
tgatgcggatggtt-ttccatcttcgcaccaccagccaccaccg---tttacattgagaaccaaagaaatttggaaagaaggggcgacgaagataag |
93 |
Q |
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| T |
15049533 |
tgatgcggatggttgttccatcttcgcaccttcagccaccaccgccgtttacattgtgaaccaaaggaatttggaaagaaggggcgacagagataag |
15049437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26841480 - 26841401
Alignment:
| Q |
1 |
tgatgcggatggtt-ttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggg |
79 |
Q |
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| T |
26841480 |
tgatgcggatggctgttccatattcgcaccatcagccaccaccgtttacattatgaaccaaaagaatttggaaagaaggg |
26841401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 12792845 - 12792810
Alignment:
| Q |
15 |
ttccatcttcgcaccaccagccaccaccgtttacat |
50 |
Q |
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| T |
12792845 |
ttccatcttcgcaccaccagccaccaccatttacat |
12792810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5745532 - 5745492
Alignment:
| Q |
1 |
tgatgcggatggtt-ttccatcttcgcaccaccagccacca |
40 |
Q |
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| T |
5745532 |
tgatgcggatggatgttccatcttcgcaccaccagccacca |
5745492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22336 - 22376
Alignment:
| Q |
1 |
tgatgcggatggtt-ttccatcttcgcaccaccagccacca |
40 |
Q |
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| T |
22336 |
tgatgcggatggatgttccatcttcgcaccaccagccacca |
22376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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