View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_35 (Length: 226)
Name: NF18633_low_35
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 25695892 - 25695972
Alignment:
| Q |
129 |
cacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaactatgaaacaccgacacagacacaaacatgtatg |
209 |
Q |
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| T |
25695892 |
cacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaactatgaaacactgacacagacacaaacatgtatg |
25695972 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 25695778 - 25695827
Alignment:
| Q |
15 |
ttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25695778 |
ttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattg |
25695827 |
T |
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