View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_37 (Length: 214)
Name: NF18633_low_37
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 51989155 - 51988959
Alignment:
| Q |
1 |
gtctacatcccaaatactataaagttatagcaataccattccatacagtgtctaccatcaaaagcacgtgtctgcctctcttttggcttgacaacagata |
100 |
Q |
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| T |
51989155 |
gtctacatcccaaatactataaaattatagcaataccattccatacagtgtctaccatcaaaagcgcgtgtctgcctctcttttggcttgacaacagata |
51989056 |
T |
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| Q |
101 |
gaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactagtttnnnnnnnnnnnnngatataacttgtaattgaccaaataaaa |
197 |
Q |
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| T |
51989055 |
gaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactagtttaaaaaataaaaaagatataacttgtaattgaccaaataaaa |
51988959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 19855863 - 19855960
Alignment:
| Q |
54 |
accatcaaaagcacgtgtctgcctctcttttggcttgacaacagatagaattgacataaccaatgtccttttgagtttttaatcaaagaaattacact |
151 |
Q |
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| T |
19855863 |
accatcagaagcgcatatctgcctctcatttgacttgacaacggatataattgacataaccgatgtccttttgagtttttaatcaaagaaatcacact |
19855960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 18662938 - 18662891
Alignment:
| Q |
103 |
attgacataaccaatgtccttttgagtttttaatcaaagaaattacact |
151 |
Q |
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| T |
18662938 |
attgacataaccagtgtccatt-gagtttttaatcaaagaaattacact |
18662891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 18669401 - 18669354
Alignment:
| Q |
103 |
attgacataaccaatgtccttttgagtttttaatcaaagaaattacact |
151 |
Q |
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| T |
18669401 |
attgacataaccagtatccttg-gagtttttaatcaaagaaattacact |
18669354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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