View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_39 (Length: 212)
Name: NF18633_low_39
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 46640495 - 46640298
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46640396 |
T |
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| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatg |
199 |
Q |
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| T |
46640395 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatg |
46640298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 46642787 - 46642590
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642787 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46642688 |
T |
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| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatg |
199 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642687 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatg |
46642590 |
T |
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