View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_7 (Length: 458)
Name: NF18633_low_7
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 45280534 - 45280957
Alignment:
| Q |
18 |
aaaggagatatctcagaacgtacgctgcataacaaatcaggacgtacgctgcatggtgaagtctttcaaatataaactccaacaaaaattaaacaataaa |
117 |
Q |
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| T |
45280534 |
aaaggagatatctcagaacgtacgctgcataacaaatcaggacgtacgctgcatggtgaagactttcaaatataaactccaacaaaaattaaacaataaa |
45280633 |
T |
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| Q |
118 |
tggaaactagaaagtgacactgtacatggaaggatataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatg |
217 |
Q |
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| T |
45280634 |
tggaaactagaaagtgacactgtacatggaaggatataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatg |
45280733 |
T |
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| Q |
218 |
atgaaaaaatggcatatacagaccaatctccacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaa |
317 |
Q |
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| T |
45280734 |
atgaaaaaatggcatatacagaccaatttccacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaa |
45280833 |
T |
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| Q |
318 |
tgtgatgtacttatggttagttgtataacttgccttaaatttaaagcaatatatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280834 |
tgtgatgtacttatggttagttgtataacttgccttaaatttaaagca--atatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatca |
45280931 |
T |
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| Q |
418 |
ctacgtaatgcgagatctgatctgtg |
443 |
Q |
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| T |
45280932 |
ctacgtaatgcgagatctgatctgtg |
45280957 |
T |
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