View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_9 (Length: 445)
Name: NF18633_low_9
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 16790963 - 16791364
Alignment:
| Q |
18 |
ctccctatctcttgttatcgcaaacaaattctaagataagattttattaattttagttggaaaaacttctttttgccaaagtaaagtttacagaaattgt |
117 |
Q |
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| T |
16790963 |
ctccctatgtcttgttattgcaaaaaaattctaagataagattttattaattttagttggaaaaacttcattttgccaatgtaaagtttacagaaattgt |
16791062 |
T |
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| Q |
118 |
taacgttattctataaacaataaaagcattttgaaaagaatcaagtataataatatacttaagtatgtcaattagagtatcattttcaacctgtatcatt |
217 |
Q |
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| T |
16791063 |
taacgttatactataaacaataaaagcattttgaaaagaatcaagtataataatatacttaagtatgtcaattagagtatcattttcaacttgtatcatt |
16791162 |
T |
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| Q |
218 |
tctctnnnnnnnttcagttctcatgatatgtcaagtccatcaatatcagagttgtcgttgtattttaacaaacgttcaaggttaagacaagattctttta |
317 |
Q |
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| T |
16791163 |
tctctaaaaaaattcagttctcatgatatgtcaagtccatcaatatcagagtt---gttgtattttaacaaacgttcaaggttaagacaagattctttta |
16791259 |
T |
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| Q |
318 |
aattttccatttctaatgtctttaatttctcaataataaatagaaaatcagtaatattttgatcaattttaaactgtttaaatctactttgaaatgaagt |
417 |
Q |
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| T |
16791260 |
aattttccatttctaatgtc------ttctcaatactaaatagaaaatcagtaatattttgatcaattttaaactgttcaaatctactttgaaatgaagt |
16791353 |
T |
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| Q |
418 |
gattgtttaat |
428 |
Q |
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| T |
16791354 |
gattgcttaat |
16791364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 26320206 - 26320383
Alignment:
| Q |
47 |
tctaagataagattttattaattttagttg-gaaaaacttctttttgccaaagtaaagt-ttacagaaattgttaacgttattctataaacaataaaagc |
144 |
Q |
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| T |
26320206 |
tctaagataaaattttattaatattaattttgaaaaacttctttctgccgaagctaactgttacaaaaattgctaacattattccataaacaataaaagc |
26320305 |
T |
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| Q |
145 |
attttgaaaagaatcaagtataataatatacttaagtatgtcaattagagtatcattttcaacctgtatcatttctct |
222 |
Q |
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| T |
26320306 |
atttggaaaagaatcaagtctaataatataattaagtatgtcaattggagtaccattttcaacctgtatgatttctct |
26320383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 26325131 - 26325289
Alignment:
| Q |
253 |
tccatcaatatcagagttgtcgttgtattttaacaaacgttcaaggttaagacaagattcttttaaattttccatttctaatgtctttaatttctcaata |
352 |
Q |
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||||||||||||||| | || || |||||||| | ||||||||||||||||||||||||||| | || | || | ||| | ||||||||||| ||| |
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| T |
26325131 |
tccatcaatatcagatgtttcattatattttaaggagtgttcaaggttaagacaagattcttttatacttccaatatttaaagactttaatttctgaatg |
26325230 |
T |
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| Q |
353 |
ataaatagaaaatcagtaatattttgatcaattttaaactgtttaaatctactttgaaa |
411 |
Q |
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|||||||||| || |||| ||||| |||||||| |||| |||| |||||||||| |
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| T |
26325231 |
ctaaatagaaagccaaacatatcttgatatattttaaattgttcaaatttactttgaaa |
26325289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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