View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_high_1 (Length: 580)
Name: NF18634_high_1
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 22 - 562
Target Start/End: Complemental strand, 38336167 - 38335627
Alignment:
| Q |
22 |
ttgagaagttagaatatctaattcactctcaaatttctcactaaaaagttcttcccaaaacccttcatcaagttctttattcaatttctcatgagtctca |
121 |
Q |
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| T |
38336167 |
ttgagaagttagaatatctaattcactctcaaatttctcactaaaaagttcttcccaaaacccttcatcaagttctttattcaatttctcattagtctca |
38336068 |
T |
|
| Q |
122 |
aatacctcaatctcttcctcatgttctccaccacctcttccaagaccctgcatttccatagccaacatttccaactctgacacttcaaatccatatcgaa |
221 |
Q |
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| T |
38336067 |
aatacctcaatctcttcctcatgttctccaccacctcttccaagaccctgcatttccatagccaacatttccaactctgacacttcaaatccatatcgaa |
38335968 |
T |
|
| Q |
222 |
caccgctccttccatcgccaccattacttgattctccatactcaattggccttctcctcttcttagtaatagcatcttcaatctcctttctcttttcctt |
321 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38335967 |
cactactccttccatcgccaccattacttgattctccatactcaattggccttctcctcttcttagtaatagcatcttcaatctcctttctcttttcctt |
38335868 |
T |
|
| Q |
322 |
ctgttgaagtaattgctgaataaaagctggatttttcatagctctagccaaaaaagccatcatttgttgctgcttaatttcggttccacgtagcctttcc |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38335867 |
ctgttgaagtaattgctgaataaaagctggatttttcatagctctggccaaaaaagccatcatttgttgctgcttaatttcagttccacgtagcctttcc |
38335768 |
T |
|
| Q |
422 |
tccattgcttgaagaatggatcttgtattatgttgctgttgtctaagcttcacaagttccatcattaacacttgtttgtcgcgcctcaaatgatcgattt |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38335767 |
tccattgcttgaagaatggatcttgtattatgttgctgttgtctaagcttcacaagttccatcattaacacttgtttgtcgcgcctcaaatgatcgattt |
38335668 |
T |
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| Q |
522 |
cttcgtctaatccaaaacgaccaacttcaacacaatgacct |
562 |
Q |
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| T |
38335667 |
cttcgtctaatccaaaacgaccaacttcaacacaatgacct |
38335627 |
T |
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