View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_high_2 (Length: 496)
Name: NF18634_high_2
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 31683374 - 31683116
Alignment:
| Q |
17 |
aatagtgtgcaaaattcaatgattgataacc-ttttaactttttaccctatgatacatcatgcggggtaatgttgagacatgcaggaccatatgcgtgtt |
115 |
Q |
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| T |
31683374 |
aatagtgtgcaaaattcaataattgataacccttttaactttttactctatgatacatcatgcggggtaatgttgagacatgcaggaccatatgggtgtt |
31683275 |
T |
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| Q |
116 |
aaatgagtgatttgatgtttatatatcactactcaatttatttacttttttaaaaaatcactactcaaaatcaataatcatattattgtttttagcactt |
215 |
Q |
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| T |
31683274 |
aaatgagtgatttgatgtttatatatcactactcaatttattta-tttttaaaaaaatcactactcaaaatcaataatcatattattgtttttagcactt |
31683176 |
T |
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| Q |
216 |
atattcatatatcctgacttcatctacaatcattaacacatcttctctctactatctttc |
275 |
Q |
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| T |
31683175 |
atattcatacatcctgacttcatctacaatcattaacacatcttctctctactatctttc |
31683116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 343 - 482
Target Start/End: Complemental strand, 31683044 - 31682903
Alignment:
| Q |
343 |
gttaataattgtgcaaattgtagttgtcggaagatatgacatttatttttgtatgcaaaatgtataaatcgt--gtaactgtaaagactgatcctctcga |
440 |
Q |
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| T |
31683044 |
gttaataattgtacaaattatagttgtcggaagatatgacatttatttttgtatgcgagatgtataaaccgtgcgtaactgcagagactgatcctctcaa |
31682945 |
T |
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| Q |
441 |
gatagtgagatccatttaaggggttcaccttttccaacaaat |
482 |
Q |
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| T |
31682944 |
gatagtgagatccatttaagaggttcacctcttccaacaaat |
31682903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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