View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18634_high_3 (Length: 452)
Name: NF18634_high_3
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 112 - 436
Target Start/End: Complemental strand, 34422702 - 34422381
Alignment:
| Q |
112 |
gattcttgtctcttaataatttcaatggtcacccccagaagccaatagattctttgaaaaaacaagcacatgaatttacttcatttctttccacctcaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34422702 |
gattcttgtctcttaataatttcaatggtcacccccagaagccaatagattctttgaaaaaacaagcacatgaatttacttcatttctttccacctcaaa |
34422603 |
T |
|
| Q |
212 |
gttgtctatataaacaagtatttaatgtaaaattataatatcgacaacacaaacaacaacaaaattagaaaagaagaagagaaaaatgggtttcactgag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34422602 |
gttgtctatataaacaagtatttaatgtaaaattataatatcgacaacacaaacaacaacaaaattagaaaagaagaagagaaaaatgggattcactgag |
34422503 |
T |
|
| Q |
312 |
aagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagtatcatattgcatga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34422502 |
aagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagtatcatattgcatga |
34422403 |
T |
|
| Q |
412 |
gttttcagtttgtactttccttttt |
436 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
34422402 |
gtt---agtttgtactttccttttt |
34422381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 112 - 397
Target Start/End: Original strand, 34685422 - 34685711
Alignment:
| Q |
112 |
gattcttgtctcttaataatttcaatggtcacccccagaagccaatagattctttgaaaaaacaagcaca-tgaatttacttcatttctttccacctcaa |
210 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||| ||| |||| | ||| ||| ||||| ||||| | |
|
|
| T |
34685422 |
gattctggtctcttcataatttcaatggtcatttccacaagccaatagattctttgagaaaacaattacaatgaactaactgcatctctttacacctata |
34685521 |
T |
|
| Q |
211 |
agttgtctatataaacaagtatttaatgtaaaattataatatcgacaacacaaacaacaacaaaattaga----aaagaagaagagaaaaatgggtttca |
306 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| | || | ||| |||| | ||||||| || | |||||| |||||||| |||||||||| |
|
|
| T |
34685522 |
agttgtctatataaacaagtattgaatgcaaaattattacattgtcaattcaaatat-aacaaaactaaactaaaaagaataagagaaatatgggtttca |
34685620 |
T |
|
| Q |
307 |
ctgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagt |
397 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||||||||| |||||| |
|
|
| T |
34685621 |
cagagaatcaagaggctttagtgaatagctcatgggaatcattcaaacaaaaccttcctggctatagtgttttcttctacactacgtaagt |
34685711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 112 - 397
Target Start/End: Complemental strand, 34430995 - 34430692
Alignment:
| Q |
112 |
gattcttgtctcttaataatttcaatggtcacccccagaagccaatagattctttgaaaaaa---caagcacatgaatttacttcatttctttccacctc |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||| ||||||||| ||| |||| ||| | |||| ||| |
|
|
| T |
34430995 |
gattcttgtctcttaataattttaatggtcaccgccacaagccaatagattctttaaaaaaaaaacaagcacattaatatactacatgtgtttcaccctt |
34430896 |
T |
|
| Q |
209 |
aaagttgtctatataaacaagtatttaatgtaaaattataatatcgacaacacaaaca--------acaacaaaa-------ttagaaaagaagaagaga |
293 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||| | | |||||| ||||||| |||| |||| ||| ||||||||||| || |
|
|
| T |
34430895 |
caagttctctatataaacaagtgtcatatgtaaaattatcacaacgacaatacaaacacaaaaaatacaaaaaaaattaaaattaaaaaagaagaaggga |
34430796 |
T |
|
| Q |
294 |
aaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgt |
393 |
Q |
| |
|
|| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||||||| ||||||| |
|
|
| T |
34430795 |
aatatgggtttcaccgagaagcaagagtctttagtgaatagttcatgggaatcattcaaacaaaatctctctggctatagtgttttgttctatactatgt |
34430696 |
T |
|
| Q |
394 |
aagt |
397 |
Q |
| |
|
|||| |
|
|
| T |
34430695 |
aagt |
34430692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 397
Target Start/End: Original strand, 34678335 - 34678542
Alignment:
| Q |
188 |
tacttcatttctttccacctcaaagttgtctatataaacaagtatttaatgtaaaattataatatcgacaacacaaacaacaaca-aaattagaaaagaa |
286 |
Q |
| |
|
|||| ||| ||||| |||||| || || |||||||||||| | ||| |||||| |||||| | || | || ||||| | ||| | ||| || |||| || |
|
|
| T |
34678335 |
tactacatctcttttcacctctaatttttctatataaacatgcattgaatgtacaattattacattgcaaatacaaatagcaaaacaaaataaaaaataa |
34678434 |
T |
|
| Q |
287 |
gaagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctac |
386 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||||||||| ||| || |||||||| ||||||||| |
|
|
| T |
34678435 |
gaagagaaatatgggtttcaccgagaaacaagaggctttagtaaatagctcattcgaatcatttaaacaaaa---tcctggttatagtgttttgttctac |
34678531 |
T |
|
| Q |
387 |
actatgtaagt |
397 |
Q |
| |
|
||||||||||| |
|
|
| T |
34678532 |
actatgtaagt |
34678542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 18270572 - 18270687
Alignment:
| Q |
282 |
aagaagaagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgt |
381 |
Q |
| |
|
|||||| ||||||| ||||||||||| || || |||||| |||||| ||||||||||||||| ||||||||||||| ||||| || ||||| |||| |
|
|
| T |
18270572 |
aagaagtagagaaatatgggtttcaccgaaaaccaagaggctttagttaatagctcatgggaagcatttaaacaaaaccttcctaaatacagtgttttgt |
18270671 |
T |
|
| Q |
382 |
tctacactatgtaagt |
397 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18270672 |
tctacactatgtaagt |
18270687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 34648990 - 34649096
Alignment:
| Q |
285 |
aagaagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttct |
384 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||| |||||||||||| || ||||||||| |||||||||| || || |||||||| ||||||| |
|
|
| T |
34648990 |
aagaagagaaatatgagtttcaccgagaaacaagaggctttagtgaatagttcttgggaatcacttaaacaaaa---ccctggttatagtgttttgttct |
34649086 |
T |
|
| Q |
385 |
acactatgta |
394 |
Q |
| |
|
|||||||||| |
|
|
| T |
34649087 |
acactatgta |
34649096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 18270397 - 18270457
Alignment:
| Q |
112 |
gattcttgtctcttaataatttcaatggtcacccccagaagccaatagattctttgaaaaa |
172 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| ||| ||||||| | ||||||||||||| |
|
|
| T |
18270397 |
gattcttgtctcttaataatgtcaatagccacctccacaagccaacaaattctttgaaaaa |
18270457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 2068460 - 2068348
Alignment:
| Q |
282 |
aagaagaagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgt |
381 |
Q |
| |
|
|||||||| ||| | |||||||| || ||||| |||||| ||||||||||||||||||||||| |||||||||||| || || ||||||| |||| |
|
|
| T |
2068460 |
aagaagaaaagagatatgggttttacagagaaacaagaggctttagtgaatagctcatgggaattatttaaacaaaa---ccctggtaatagtgttttgt |
2068364 |
T |
|
| Q |
382 |
tctacactatgtaagt |
397 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2068363 |
tctacactatgtaagt |
2068348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 40847791 - 40847682
Alignment:
| Q |
288 |
aagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctaca |
387 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||| || | ||||||||||||| | || || ||||| ||||| ||||||||| |||||||||| |
|
|
| T |
40847791 |
aagagaaatatgggtttcactgagagacaagaggctttggttagtagctcatgggaaaccttcaatcaaaaccttcctttctatagtgttttgttctaca |
40847692 |
T |
|
| Q |
388 |
ctatgtaagt |
397 |
Q |
| |
|
| ||||||| |
|
|
| T |
40847691 |
ccttgtaagt |
40847682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 2068550 - 2068501
Alignment:
| Q |
197 |
tctttccacctcaaagttgtctatataaacaagtatttaatgtaaaatta |
246 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||||||| |||||| ||||| |
|
|
| T |
2068550 |
tcttttcacctccaagttttctatataaacaagtattgaatgtacaatta |
2068501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 45163451 - 45163350
Alignment:
| Q |
288 |
aagagaaaaatgggtttcactgagaagcaagagtttttagtgaatagctcatgggaatcatttaaacaaaatcttcccggctatagtgtcttgttctaca |
387 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||| | | |||||| ||||||||||||| | ||||| |||||||| | ||||||| |||||||||| |
|
|
| T |
45163451 |
aagagaaatatgagtttcatcgagaagcaagagactctggtgaatggctcatgggaatctgtcaaacataatcttcctcaccatagtgttttgttctaca |
45163352 |
T |
|
| Q |
388 |
ct |
389 |
Q |
| |
|
|| |
|
|
| T |
45163351 |
ct |
45163350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University