View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_high_9 (Length: 342)
Name: NF18634_high_9
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_high_9 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 8351293 - 8351620
Alignment:
| Q |
3 |
ctagttatttaacatgatgttaaatatatgaagcacaatcattatcgatgtacttatttttaaatattaaatttgtataattaagaaaattgttgtgaat |
102 |
Q |
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| T |
8351293 |
ctagttatttaatatagtgttaaatatatgaagcactaccattatcgatgtacttatttttaaatattaaatttgtataattaaaaaaattgttgtgaat |
8351392 |
T |
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| Q |
103 |
ttggtgagacaagtatgaatgacaactaataataactaaaattggcccaaacaacaatgataataacagatatagaaattcttttggcttcacaaattag |
202 |
Q |
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| T |
8351393 |
ttggtgagacaagtatgaatgacaactagtaatatctaaaattggcccaagcaacaataataataacagatatagaaattcttttggcttcacaaattag |
8351492 |
T |
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| Q |
203 |
gctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaatgcttcaatctttttctaataatgttc |
302 |
Q |
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| T |
8351493 |
gctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaattcttcaatctttttctaataatgttc |
8351592 |
T |
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| Q |
303 |
gtatctaaaattcatcatgagaaatatt |
330 |
Q |
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| T |
8351593 |
ctatctaaaattcatcatgagaaatatt |
8351620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 8412569 - 8412891
Alignment:
| Q |
1 |
acctagttatttaacatgatgttaaatatatgaagcacaatcattatcgatgtacttatttttaaatattaaatttgtataattaagaaaattgttgtga |
100 |
Q |
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| T |
8412569 |
acctagttatttaatatggtgctaaatatatgaagcactaccattatcgatgtacttacttttaaatattaaattcgtataattaagaaaattgttgtga |
8412668 |
T |
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| Q |
101 |
atttggtgagacaagtatgaatgacaactaataataactaaaattggcccaaacaacaatgataataacagatatagaaattcttttggcttcacaaatt |
200 |
Q |
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| T |
8412669 |
atttggtgagacaagtatcaatga-------taataactaaaattcgcccaagcaacaataataataacagatatagaaattcttttgtcttcacaaatt |
8412761 |
T |
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| Q |
201 |
aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaatgcttcaatctttttctaataatgt |
300 |
Q |
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| T |
8412762 |
aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaatgcttcaatctttttctaattatgt |
8412861 |
T |
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| Q |
301 |
tcgtatctaaaattcatcatgagaaatatt |
330 |
Q |
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| T |
8412862 |
tcgtatctaaaattcatcatgagaaatatt |
8412891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 8356680 - 8356807
Alignment:
| Q |
201 |
aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaatgcttcaatctttttctaataatgt |
300 |
Q |
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| T |
8356680 |
aggctgcaacataaatgctaaaaatgattcatgcgattaagtaacatatcatttccttgtagaaataagaacaaatgcttcaatctttttctaatcatgt |
8356779 |
T |
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| Q |
301 |
tcgtatctaaaattcatcatgagaaata |
328 |
Q |
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| T |
8356780 |
tccgatctaaaattcatcatgagaaata |
8356807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 8451903 - 8452004
Alignment:
| Q |
6 |
gttatttaacatgatgttaaatatatgaagcacaatcattatcgatgtacttatttttaaatattaaatttgtataattaagaaaattgttgtgaatttg |
105 |
Q |
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| T |
8451903 |
gttatttagtatggtgctaaatatacaaagcattatcattgtggaggtacttacttttaaatattaaattcgcataattgagaaaattgttgcgaaattg |
8452002 |
T |
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| Q |
106 |
gt |
107 |
Q |
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|| |
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| T |
8452003 |
gt |
8452004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 8365084 - 8365142
Alignment:
| Q |
270 |
aacaaatgcttcaatctttttctaataatgttcgtatctaaaattcatcatgagaaata |
328 |
Q |
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| T |
8365084 |
aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtcatgagaaata |
8365142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 8968 - 9022
Alignment:
| Q |
201 |
aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttc |
255 |
Q |
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| T |
8968 |
aggctgcaccttgaatgctaaaaatgattcatgccattaagtaacgtatcatttc |
9022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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