View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_13 (Length: 254)
Name: NF18634_low_13
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28297039 - 28297276
Alignment:
| Q |
1 |
gaagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtcca |
100 |
Q |
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| T |
28297039 |
gaagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtcca |
28297138 |
T |
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| Q |
101 |
tagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28297139 |
tagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttag |
28297238 |
T |
|
| Q |
201 |
tagaattttgggtttggattaattttctaagaatgaag |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28297239 |
tagaattttgggtttggattaattttctaagaatgaag |
28297276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28288174 - 28287939
Alignment:
| Q |
1 |
gaagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtcca |
100 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
28288174 |
gaagatttgagaattttcatgtaaaacttgtttggctaattgtggtgatgaaattactatggttgttaatgttcctagttttagtgtcataattggtcca |
28288075 |
T |
|
| Q |
101 |
tagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttag |
200 |
Q |
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| T |
28288074 |
tagatgtttgagagatttgtgagtgtcctgtgtgggtttttgccaagttgtaagatgtttcctatgatgggaagtggctttggccctggtggaagttttg |
28287975 |
T |
|
| Q |
201 |
tagaattttgggtttggattaattttctaagaatga |
236 |
Q |
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|||||||||| |||||| |||||||||||||||||| |
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| T |
28287974 |
tagaattttgagtttggtttaattttctaagaatga |
28287939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 28321102 - 28321338
Alignment:
| Q |
2 |
aagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccat |
101 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||||| || || || |||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
28321102 |
aagatttgagaattgtcatgtaaaacttgtttggctacttgtggggaagagatcactatggttgttatgcttcctagttttaatgtcatgattggtccat |
28321201 |
T |
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| Q |
102 |
agttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttagt |
201 |
Q |
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|| ||| |||||||||||| | |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
28321202 |
agatttttgagagttttgttaatgccttgtgtggatttttgccaagttctaagatgtttccaatgatgggaagtggctttggccctggtggaagtttagt |
28321301 |
T |
|
| Q |
202 |
agaattttgggtttggattaattttctaagaatgaag |
238 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
28321302 |
agaattttgggtttggtttgattttctaagaatgaag |
28321338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 28331584 - 28331795
Alignment:
| Q |
5 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
104 |
Q |
| |
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|||||||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
28331584 |
atttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccatagg |
28331683 |
T |
|
| Q |
105 |
tttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttagtaga |
204 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| || || || |
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| T |
28331684 |
tttttgagagttttgtgagtgccttgtgtgggtttttgccaagttctaagatgtttccaattatgggaaatgggtttggccctggtggaagcttggtgga |
28331783 |
T |
|
| Q |
205 |
attttgggtttg |
216 |
Q |
| |
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|||||||||||| |
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| T |
28331784 |
attttgggtttg |
28331795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28310527 - 28310764
Alignment:
| Q |
1 |
gaagatttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtcca |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| ||| || ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
28310527 |
gaagatttgagaattttcatgtaaaacttgtttggctagttgaggtgatgagattactatggttgttaatgttcctagttttagtgtcataattggtcca |
28310626 |
T |
|
| Q |
101 |
tagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaagtgggtatggccctggtggaagtttag |
200 |
Q |
| |
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||| | | |||||| |||||||||| | | ||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | |
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| T |
28310627 |
tagatgtttgagagatttgtgagtgtcctgtgtggatttttgccaagttgtaagatgtttcctatgatgggaagtggttttggccctggtggaagttttg |
28310726 |
T |
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| Q |
201 |
tagaattttgggtttggattaattttctaagaatgaag |
238 |
Q |
| |
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|||||||||| |||||| |||||||| ||| ||||||| |
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| T |
28310727 |
tagaattttgagtttggtttaattttttaaaaatgaag |
28310764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 28336390 - 28336523
Alignment:
| Q |
27 |
cttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagttttgtgagag---ttttgtgag |
123 |
Q |
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||||||||| || |||||| ||||| |||||||||| |||||| | || ||||||||||||||||||||||| ||| ||| ||||| ||||||||| |
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| T |
28336390 |
cttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtccgtagattttagagagtttttttgtgag |
28336489 |
T |
|
| Q |
124 |
tgccttatgtgggtttttgccaagttctaagatgt |
158 |
Q |
| |
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|| ||| ||||||||||| | ||||||| |||||| |
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| T |
28336490 |
tgacttgtgtgggttttt-caaagttctgagatgt |
28336523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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