View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_15 (Length: 244)
Name: NF18634_low_15
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_15 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28296489 - 28296732
Alignment:
| Q |
1 |
tattaagaagtgaatctaacacatcattgcacacctcataatcaccatcggaagctcttgaacaaattctttcttcaataattccattaaaaatatcaca |
100 |
Q |
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| T |
28296489 |
tattaagaagtgaatccaacacatcattgaacacctcaaaatcaccattggaagctcttgaacaaattctttcttcaataattccattaaaaatatcaca |
28296588 |
T |
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| Q |
101 |
caacttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcctaccagctgct |
200 |
Q |
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| T |
28296589 |
caacttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaatattaggcctaccagctgct |
28296688 |
T |
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| Q |
201 |
tccatgtaactccaaataatgttctcaaactcttgagacttttt |
244 |
Q |
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| T |
28296689 |
tccatgtaactccaaataatgttctcaaactcttgagacttttt |
28296732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 28331032 - 28331272
Alignment:
| Q |
3 |
ttaagaagtgaatctaacacatcattgcacacctcataatcaccatcggaagctcttgaacaaattctttcttcaataattccattaaaaatatcacaca |
102 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | | ||||| |||||||| |||||||| |||||||||||||| |||||||||||| | |
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| T |
28331032 |
ttaagaagtgaatctaacacatcattgcacaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacata |
28331131 |
T |
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| Q |
103 |
acttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcctaccagctgcttc |
202 |
Q |
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| T |
28331132 |
acttcttcatgtaactggtcatctttgcatgcacaccttgtggatcaaagggacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttc |
28331231 |
T |
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| Q |
203 |
catgtaactccaaataatgttctcaaactcttgagactttt |
243 |
Q |
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| T |
28331232 |
catgaaactcccaataattttcttaaactcttgagactttt |
28331272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28304379 - 28304616
Alignment:
| Q |
1 |
tattaagaagtgaatctaacacatcattgcacacctcataatcaccatcggaagctcttgaacaaattctttcttcaataattccattaaaaatatcaca |
100 |
Q |
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|||| ||||||||||||||| |||||||||| ||||||| || | | |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28304379 |
tattgagaagtgaatctaacccatcattgcaaacctcat---cagctttggaagctcttgaacaaattctttcttcaataattccataaaaaatatcaca |
28304475 |
T |
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| Q |
101 |
caacttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcctaccagctgct |
200 |
Q |
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||||| || || || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
28304476 |
taacttcttcatgtaactggtcatctttgcatgcacaccttgtggatcaaagggacgaagaattggaaagaaatctgaaacattaggcttaccagctttt |
28304575 |
T |
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| Q |
201 |
tccatgtaactccaaataatgttctcaaactcttgagactt |
241 |
Q |
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| T |
28304576 |
tccatgataccccaaataatgttttcaaactctttagactt |
28304616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 28309978 - 28310219
Alignment:
| Q |
2 |
attaagaagtgaatctaacacatcattgcacacctcataatcaccatcggaagctcttgaacaaattctttcttcaataattccattaaaaatatcacac |
101 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||| || |||| ||||||||| ||||||||||||||| ||||||| |||||| |||||| |
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| T |
28309978 |
attaagaagtgaatctaacacatcattgcacaccttagaatcagaattggaatctcttgaactaattctttcttcaattattccatcaaaaatctcacac |
28310077 |
T |
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| Q |
102 |
aacttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcctaccagctgctt |
201 |
Q |
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|||||||| ||| |||||| ||| |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
28310078 |
aactttttcatatgattggtaatccttgcgtgtattctttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcttaccagcttctt |
28310177 |
T |
|
| Q |
202 |
ccatgtaactccaaataatgttctcaaactcttgagactttt |
243 |
Q |
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||||| || ||| |||| ||||| ||| ||||||||||||| |
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| T |
28310178 |
ccatgataccccacataacgttcttaaattcttgagactttt |
28310219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28320551 - 28320788
Alignment:
| Q |
1 |
tattaagaagtgaatctaacacatcattgcacacctcataatcaccatcggaagctcttgaacaaattctttcttcaataattccattaaaaatatcaca |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||| || | | ||| | |||||||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
28320551 |
tattaagaagtgaatctaacacatcattgcaaacctcaa---caactttggaggatcttgaacgaattctttcttcaataattccatcaaaaatctcaca |
28320647 |
T |
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| Q |
101 |
caacttttttatacaattggtcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcctaccagctgct |
200 |
Q |
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|||||| || ||| |||||||||| |||||| || |||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||| || |
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| T |
28320648 |
caacttcttcatatgattggtcatccttgcatacaaaccttgtggatctaagggacgaagaattggaaagaaatctgaaatattaggcttaccagcttct |
28320747 |
T |
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| Q |
201 |
tccatgtaactccaaataatgttctcaaactcttgagactt |
241 |
Q |
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|||||| || |||||||||| ||| ||| ||||||||||| |
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| T |
28320748 |
tccatgataccccaaataatggtcttaaattcttgagactt |
28320788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 28288603 - 28288550
Alignment:
| Q |
122 |
catctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatc |
175 |
Q |
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| T |
28288603 |
catctttgcatacaatcgttgtgggtctaaaggacgaagaattggaaagaaatc |
28288550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 28288716 - 28288683
Alignment:
| Q |
3 |
ttaagaagtgaatctaacacatcattgcacacct |
36 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
28288716 |
ttaagaagtgaatctaacacatcattgcaaacct |
28288683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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