View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_4 (Length: 450)
Name: NF18634_low_4
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 434
Target Start/End: Original strand, 12265580 - 12266006
Alignment:
| Q |
4 |
atactcattgaaccacaaaataagtcactcttgtatnnnnnnnnntgtcgcaaaaatgaatatcattttccttataaaattaattaannnnnnnngaaaa |
103 |
Q |
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| T |
12265580 |
atactcattgaaccacaaaataagtcactcttgtataaaaaaaa-tgtcgcaaaaatgaatatcattttccttataaaatcaattaattttttttgaaaa |
12265678 |
T |
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| Q |
104 |
aatggatttattaattgtttaaactttttaataaaagaaattgtgatacattaaatgcaaaaagacaaacattttaaatgagtgtaaaaagaatctttta |
203 |
Q |
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| T |
12265679 |
aatggatttattaattgttttaactttttaataaaagaaattgtgatacattaaatgcaaaaggacaaacattttaaatgagtgtaaaaagaatctttta |
12265778 |
T |
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| Q |
204 |
aacaataaatgtattattaaaagttttggctataaatatagatcatgtgcttaacattttctcatcaagtactaaaaatcacaaatcttcttaagttact |
303 |
Q |
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| T |
12265779 |
aacaataaatgtattattaaaagttttggctataaatatagatcatgtgcttaacattttctcatcaagtactaaaaatcacaaatcttcttaagttact |
12265878 |
T |
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| Q |
304 |
atagattgaagaaatatggcaatgattgagctgaagaaagttcttgtgatcatgttcatgattattattattatgctagttgtagttcaactatgtgaca |
403 |
Q |
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| T |
12265879 |
atagattgaagaaatatggcaatgattgagctgaagaaagttcttgtgatcatgttcatg---attattattatgctagttgtagttcaactatgtgaca |
12265975 |
T |
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| Q |
404 |
ccactcaatcaaaaatagttgatgaaagttg |
434 |
Q |
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| T |
12265976 |
ctactcaatcaaaaatagttgatgaaagttg |
12266006 |
T |
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