View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_5 (Length: 412)
Name: NF18634_low_5
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 32620439 - 32620044
Alignment:
| Q |
18 |
atgaaccatgtaaacacaaaaatgtaaaaaatacgggcttcaaaaatctcatctcataggttataatcttgctatacttggcaagtaaggttggaaattt |
117 |
Q |
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| T |
32620439 |
atgaaccatgtaaacacaaaaatgtaaaaaatatgggcttcaaaaatctcatctcataggttataatcttgctatgcttggcaagtaaggttggaaattt |
32620340 |
T |
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| Q |
118 |
atgtcaaagccaaattgtggagtatcccgcttttttggg-tagatatttccctccagtgattatcttgatttatgtataggatatgatgcaagttatgtg |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32620339 |
atgtcaaagccaaattgtggagtatcccgcctttttggggtagatatttccctccagtgattatcttgatttatgtataggatatgatgcaagttatgtg |
32620240 |
T |
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| Q |
217 |
tggcggagtatttgaaatgtaaaatgtgttgtttgggaatgtaatagatggtgtattagttctagtgaacatatggaatctagttttacacaataactga |
316 |
Q |
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||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32620239 |
tggcggaatatttggaatgtaaaatgtgttgtttggtaatgtagtagatggtgtattagttctagtgagcatatggaatctagttttacacaataactga |
32620140 |
T |
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| Q |
317 |
taacacggtgcatttgttagatgactcagacatggcgcaataaattggacatgcactagattcgggcatagtagtaacaaaggtaattaaacagat |
412 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| |
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| T |
32620139 |
taacacggtgcatttgttagatgactgagacatggtgcaataaattggacatgcaccagattcaggcctagcagtaacaaaggtaattaaacagat |
32620044 |
T |
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