View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18634_low_7 (Length: 402)

Name: NF18634_low_7
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18634_low_7
NF18634_low_7
[»] chr4 (6 HSPs)
chr4 (14-188)||(24750906-24751082)
chr4 (184-383)||(24751116-24751318)
chr4 (184-360)||(51501252-51501428)
chr4 (185-350)||(24766166-24766331)
chr4 (21-188)||(51501462-51501629)
chr4 (22-188)||(24765965-24766131)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 24750906 - 24751082
Alignment:
Q  14 gcaaaggtgatgccggctgtagatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccat--atgaaaattgtacaaa 111  Q
    |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | || |||||||||||  ||||||| ||||||||    
T  24750906 gcaaagatgatgccggctgtagatggcgtaaggaagaagcaaccgaaattctcccaaagagacggttgtgagtaaagtccatgtatgaaaaatgtacaaa 24751005  T
Q  112 gctaatgccatagacttatgaattaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc 188  Q
    |||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  24751006 gctaatgccatagacttaggaattaaaccgttcaaattgttccgcggcagatcaaggttaatgaaatatgaagtttc 24751082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 383
Target Start/End: Original strand, 24751116 - 24751318
Alignment:
Q  184 gtttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacc 283  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||    
T  24751116 gtttctacttaaatccaaatggctcattctagaagccaacaaagtccttgggatccttcccatcaagtttctatacttcaggttcaacaagaccaggacc 24751215  T
Q  284 aacatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagt---ctgctagtccttaaatggggcctccaatggcgttgt 380  Q
     || | |||||||  ||||||||| ||||||||  |||||| |||||| ||||||||||||   ||||||| |||||||||||||||||||||| |||||    
T  24751216 gacgtgtatcctagtgtaaaaggaattagaccgcgtaatcgattcaacaacaagtccaagtctgctgctagcccttaaatggggcctccaatggtgttgt 24751315  T
Q  381 tgc 383  Q
    |||    
T  24751316 tgc 24751318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 184 - 360
Target Start/End: Complemental strand, 51501428 - 51501252
Alignment:
Q  184 gtttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacc 283  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| || ||||| ||  |||||||||||||||||||| ||| ||||    
T  51501428 gtttctacttaaatccaaatgactcattctagaagccaacaaagtccttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagacc 51501329  T
Q  284 aacatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagtctgctagtccttaaat 360  Q
      ||||| ||||| || ||||||| || |||| ||||||||||||||||| ||||||||||||||||| || |||||    
T  51501328 ggcatttgtcctagcgaaaaaggaattggaccagataatcggttcaacgataagtccaagtctgctagcccataaat 51501252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 24766166 - 24766331
Alignment:
Q  185 tttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacca 284  Q
    |||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||||||||| ||  ||||||||||||||| |||| ||| |||      
T  24766166 tttctacttaaatctaaatggctcattctagaagccaacaaagtacttgggatccttcctgtcaatttgttatacttcaggttcagcgagtccatgactg 24766265  T
Q  285 acatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagtctgcta 350  Q
    |||||| ||||| || ||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  24766266 acatttgtcctagcgaaaaaggaattggaccggataattggttcaaggacaagtccaagtctgcta 24766331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 51501629 - 51501462
Alignment:
Q  21 tgatgccggctgtagatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccatatgaaaattgtacaaagctaatgcc 120  Q
    |||||||||| | ||||||||||||||||||||||| | |||| ||||||||||| || | ||  ||||||||| |||   | |||||||||||||||||    
T  51501629 tgatgccggcggaagatggcttaaggaagaagcaaccggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctaatgcc 51501530  T
Q  121 atagacttatgaattaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc 188  Q
    || |||||| |||||||||| ||||||| |||| ||| || |||||||||||||||||||||||||||    
T  51501529 atcgacttaggaattaaaccgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttc 51501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 24765965 - 24766131
Alignment:
Q  22 gatgccggctgtagatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccatatgaaaattgtacaaagctaatgcca 121  Q
    ||||| ||||| ||||||||||||||||||||||  | |||| ||||||||||| || | ||  ||||||||| |||   | |||||||||||| |||||    
T  24765965 gatgcgggctgaagatggcttaaggaagaagcaatcggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctattgcca 24766064  T
Q  122 tagacttatgaattaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc 188  Q
    |||| ||| |||||||||| ||||||| |||| ||| || ||||||||| |||||||||||||||||    
T  24766065 tagaattaggaattaaaccgttcaaattgttccgcgacaaatcaaggttgatgaaatatgaagtttc 24766131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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