View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_8 (Length: 385)
Name: NF18634_low_8
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 3387329 - 3387713
Alignment:
| Q |
1 |
tacaaccaaaaatggctttgtcgatactaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatc |
100 |
Q |
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| T |
3387329 |
tacaatcaaaaatggctttgtcgatattaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatc |
3387428 |
T |
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| Q |
101 |
tctgtataataaccctgcaacattcttctttgtgtcttttccacggtggtttatgaaaacttgacatgttggttgaataattttgcggtagaaacgttgc |
200 |
Q |
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| T |
3387429 |
tttgtatagtaaccctgcaacattcttctttgtgtctattccacggtggtttatgaaaacttgacatgttggttgaataattttgcggtagaaatgttgc |
3387528 |
T |
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| Q |
201 |
atggcttcttctataagcttcctatcttaattgaaaactttgtttcttaattgtgttttggtttgaaagttgttgttatatagttatcattttgagtaaa |
300 |
Q |
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| T |
3387529 |
atggcttcttctataagcttcctatcttaattgaaaactttgtttcttaattgtgttttggtttgaaagttgttgttatatagttatcattttgagtaaa |
3387628 |
T |
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| Q |
301 |
ttttggagcaaatggggtttcattattttaattttacaattcaaattaggggtatggtgcatccaagaaaatacttaggaattta |
385 |
Q |
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| T |
3387629 |
ttttggagcaaatggggtttcattattttaattttacacttcaaattaggggtatggtgcatccaagaaaatacttaggaattta |
3387713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 3393880 - 3394064
Alignment:
| Q |
36 |
agtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatctctgtataataaccctgcaacattcttctttgtgt |
135 |
Q |
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| T |
3393880 |
agtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatctttgtataataaccctgcaacgttcttctttgtgt |
3393979 |
T |
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| Q |
136 |
cttttccacggtggtttatgaaaacttgacatgttggttgaataattttgcggtagaaacgttgcatggcttcttctataagctt |
220 |
Q |
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| T |
3393980 |
ctatcccacggtggtttatgaaaacttgacatgttggttgaacaattttgcggtagaaacgttgcatggcttcttctataagctt |
3394064 |
T |
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