View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18634_low_9 (Length: 348)
Name: NF18634_low_9
Description: NF18634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18634_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 46790488 - 46790171
Alignment:
| Q |
21 |
agagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaa |
120 |
Q |
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| T |
46790488 |
agagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaa |
46790389 |
T |
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| Q |
121 |
gtgaagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttcattacctcatcttcc |
220 |
Q |
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| T |
46790388 |
gtgcagcaggattagagtttgataataccacagccactggtatagtacaatacagttggagtcatacaccactttcaactccttcattacctcatcttcc |
46790289 |
T |
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| Q |
221 |
aaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttacctaagaaatacccccgtgaagtcccaacaaaaatcaccactcat |
320 |
Q |
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| T |
46790288 |
aaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttacctaagaaatacccccatgaagtcccaacaaaaatcaccactcat |
46790189 |
T |
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| Q |
321 |
gtgataaccacaggttct |
338 |
Q |
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| T |
46790188 |
gtgataaccacagtttct |
46790171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 46783046 - 46782788
Alignment:
| Q |
21 |
agagattacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46783046 |
agagattacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaa |
46782947 |
T |
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| Q |
121 |
gtg---aagcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttcattacctcatct |
217 |
Q |
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| T |
46782946 |
ctgataacgcaagagtagagtttgataacaccacaaccactgctatagtgcaatacagagagagttatactccaatttcaacttcttcattaccttttct |
46782847 |
T |
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| Q |
218 |
tccaaactataatgacacacaagcagcttttgacttcatcagaagcattagaggcttac |
276 |
Q |
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| T |
46782846 |
tcccaactataatgacacacaagcagcttttaacttcatcagaagcattagcggcttac |
46782788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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