View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_high_13 (Length: 251)
Name: NF18635_high_13
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 9164581 - 9164355
Alignment:
| Q |
18 |
aggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaaggggaaaagaaaagaaaa |
117 |
Q |
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| T |
9164581 |
aggaacctaaggaagaacctattgacagcagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaaggggaaaagaaaagaaaa |
9164482 |
T |
|
| Q |
118 |
tgaggaagcaaagtcatctattagtgtaccacctaagaagttgaagacagaaaatgtaagtcatcgcttttgttggctagcttaatcatgagggcaccan |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9164481 |
tgaggaagcaaagtcatctattagtgtaccaactaagaagttgaagacagaaaatgtaagtcatcgcttttgttggctagcttaatcatgagggcaccat |
9164382 |
T |
|
| Q |
218 |
nnnnnnnatataattgtttctttgctt |
244 |
Q |
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|||||||||||||||||||| |
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| T |
9164381 |
tttttttatataattgtttctttgctt |
9164355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 9151766 - 9151562
Alignment:
| Q |
18 |
aggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaag---------gggaaaag |
108 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
9151766 |
aggaacctaaggaagaacctgttgataacagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaagtcttcaaaggcgaaaag |
9151667 |
T |
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| Q |
109 |
aaaagaaaatgaggaagcaaagtcatctattagtgtaccacctaagaagttgaagacagaaaatgtaagtcatcgc-ttttgttggctagcttaatcatg |
207 |
Q |
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||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||| ||| |
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| T |
9151666 |
aaaagcaaacgaggaagcaaagccatctattagtgtaccacctaagaaggtgaagacagaaaatgtaagtcattgctttttgtcggctagcttaataatg |
9151567 |
T |
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| Q |
208 |
agggc |
212 |
Q |
| |
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||||| |
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| T |
9151566 |
agggc |
9151562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 9190728 - 9190840
Alignment:
| Q |
18 |
aggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaaggggaaaagaaaagaaaa |
117 |
Q |
| |
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|||||||||| ||||||||| |||| | ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||||||| ||| |
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| T |
9190728 |
aggaacctaaagaagaacctgttgaaagtagtccttcaaaacctacggcaacatgacctactcgtggaacacctgcttcaaaggcgaaaagaaaagcaaa |
9190827 |
T |
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| Q |
118 |
tgaggaagcaaag |
130 |
Q |
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||||||||||| |
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| T |
9190828 |
caaggaagcaaag |
9190840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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