View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18635_high_8 (Length: 336)

Name: NF18635_high_8
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18635_high_8
NF18635_high_8
[»] chr6 (5 HSPs)
chr6 (166-211)||(31151402-31151447)
chr6 (269-321)||(31202196-31202248)
chr6 (282-312)||(31151191-31151221)
chr6 (166-208)||(31190631-31190672)
chr6 (269-321)||(31172667-31172719)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 31151447 - 31151402
Alignment:
Q  166 gcatgtatagataggaggataaaaagttgtagggagatttgatatg 211  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  31151447 gcatgtatagataggaggataaaaaattgtaggcagatttgatatg 31151402  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 31202248 - 31202196
Alignment:
Q  269 attttaggatgtctttggtgacattaatgtatgtgaattctaaccaagattct 321  Q
    ||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  31202248 attttagcatgtctttgatgatattaatgtttgtgaattctaaccaagattct 31202196  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Complemental strand, 31151221 - 31151191
Alignment:
Q  282 tttggtgacattaatgtatgtgaattctaac 312  Q
    |||||||||||||||||||||||||||||||    
T  31151221 tttggtgacattaatgtatgtgaattctaac 31151191  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 31190672 - 31190631
Alignment:
Q  166 gcatgtatagataggaggataaaaagttgtagggagatttgat 208  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  31190672 gcatgtata-ataggaggataaaaagttgcagggagatttgat 31190631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 31172719 - 31172667
Alignment:
Q  269 attttaggatgtctttggtgacattaatgtatgtgaattctaaccaagattct 321  Q
    ||||||| |||||||||   |||||||||| |||||||||||||| |||||||    
T  31172719 attttagcatgtctttgagaacattaatgtttgtgaattctaaccgagattct 31172667  T

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