View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18635_high_9 (Length: 315)

Name: NF18635_high_9
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18635_high_9
NF18635_high_9
[»] chr4 (1 HSPs)
chr4 (18-315)||(25886304-25886601)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 25886304 - 25886601
Alignment:
Q  18 gtgccatcgttatacaagccatcacacatttgtgagtttccacatccaagctcgaggacagaggaattgggtgtgagatggggttgaatgatgtgacgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886304 gtgccatcgttatacaagccatcacacatttgtgagtttccacatccaagctcgaggacagaggaattgggtgtgagatggggttgaatgatgtgacgaa 25886403  T
Q  118 aatgggaatattctttgaaccattcatatttctcctccttcgaaaacctctcatccctgatacagatgaagcatcaaattaaattctggaaaattaatac 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25886404 aatgagaatattctttgaaccattcatatttctcctccttcgaaaacctctcatccctgatacatatgaagcatcaaattaaattctggaaaattaatac 25886503  T
Q  218 tgatgactagtgattagtgaaaagttaccagtaagaaggattaaggtacgccgatgcagaggagggttctaccgttgccgttgtcgtcgggtgtgttt 315  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886504 tgatgactagtgattagtgaatagttaccagtaggaaggattaaggtacgccgatgcagaggagggttctaccgttgccgttgtcgtcgggtgtgttt 25886601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University