View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_11 (Length: 314)
Name: NF18635_low_11
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 24829505 - 24829788
Alignment:
| Q |
10 |
aagaatattagagactgagaatggtgtatactttaacaatgattactccagcatatctaaattctacattaagcttaaactagaatggtgtatactttca |
109 |
Q |
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| T |
24829505 |
aagaatattagagactgagaatggtgtatactttaacaatgattagtccagcatatctaaattctacattaagcttaaactagaatggtgtatactttca |
24829604 |
T |
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| Q |
110 |
tatagaaaaagattccaccacattaagaatgttatttaaactcaatcaacagtgaatagggaacatttcttacttgaagaggagccttggtacaacaatt |
209 |
Q |
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| T |
24829605 |
tacagaaaaagattccaccacattaagaatgttatttaaactcaatcaa----gaatagggaacatttcttacttgaagaggagccttggtacaacaatt |
24829700 |
T |
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| Q |
210 |
ggaatttgcagccatgtgactaggaggacaaaatgtgtgtcatggaatcaaattgtgaatgcaaagtaaga-ttgcttataatagacc |
296 |
Q |
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| T |
24829701 |
ggaatttgcagccatgtgactaggaggacaaaatgtgtgtcatggaatcaaattgtgaatgcaaagtaagatttgcttataatagacc |
24829788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 23248786 - 23248708
Alignment:
| Q |
41 |
tttaacaatgattactccagcatatctaaattctacattaagcttaaactagaatggtgtatactttcatatagaaaaa |
119 |
Q |
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| T |
23248786 |
tttaacaatgattagtccagcatgtctaaattccacattaagcttaaactagaatagtgtatgctttcatacagaaaaa |
23248708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 23248656 - 23248559
Alignment:
| Q |
199 |
gtacaacaattggaatttgcagccatgtgactaggaggacaaaatgt-gtgtcatggaatcaaattgtgaatgcaaagtaagattgcttataatagacc |
296 |
Q |
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| T |
23248656 |
gtacaacaattggaatt-gctgccacgtgactaagtggacaaaaaattgtgtcatggaatcaaactgtgaatgcaaagtaagattgcttaaaatagacc |
23248559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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