View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_13 (Length: 261)
Name: NF18635_low_13
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 20836636 - 20836722
Alignment:
| Q |
136 |
ctttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtgttgcattggggaaaactaaaatcatgacaa |
222 |
Q |
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| T |
20836636 |
ctttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtattgcattggggaaaactaaaatcatgacaa |
20836722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 20810281 - 20810367
Alignment:
| Q |
136 |
ctttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtgttgcattggggaaaactaaaatcatgacaa |
222 |
Q |
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| T |
20810281 |
ctttacaaaaacaacttcttttagatctctttgaaataaagcagaagattcatggtgttgcattggggaaaaataaaatcatgacaa |
20810367 |
T |
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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 20810377 - 20810406
Alignment:
| Q |
218 |
gacaaaaggttttggtcgtactcgatgatg |
247 |
Q |
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| T |
20810377 |
gacaaaaggttttggtcgtactcgatgatg |
20810406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 20836732 - 20836761
Alignment:
| Q |
218 |
gacaaaaggttttggtcgtactcgatgatg |
247 |
Q |
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| T |
20836732 |
gacaaaaggttttggtcgtactcgatgatg |
20836761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 31174026 - 31174093
Alignment:
| Q |
137 |
tttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtgttgcattgggga |
204 |
Q |
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| T |
31174026 |
tttacaacaacaacttcttttagatctcctgcaaataaaacaagagattcatagcattgcattgggga |
31174093 |
T |
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