View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_15 (Length: 250)
Name: NF18635_low_15
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3387346 - 3387102
Alignment:
| Q |
1 |
aagccatttttggttgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacnnn |
100 |
Q |
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| T |
3387346 |
aagccatttttgattgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaa |
3387247 |
T |
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| Q |
101 |
nnnnngagtcgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcagaaacaacttctaaggtacaattta |
200 |
Q |
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| T |
3387246 |
aaaaagagccgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcaggaacaacttctaaggtacaattta |
3387147 |
T |
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| Q |
201 |
gcactccaagaagccaaagatactgtggcgttaccctttgcttct |
245 |
Q |
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| T |
3387146 |
gcactccaagaagccaaagataccgtggcgttaccctttgattct |
3387102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3393862 - 3393649
Alignment:
| Q |
1 |
aagccatttttggttgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacnnn |
100 |
Q |
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|||| ||| |||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
3393862 |
aagcaattattggttgtaaggttggtgttaccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttctgatggagacaaa |
3393763 |
T |
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| Q |
101 |
nnnnngagtcgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcagaaacaacttctaaggtacaattta |
200 |
Q |
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| T |
3393762 |
aaaaagagtcgttcctatcttcttcgacgtaaaaccgtcgcagcttatggtcaaggacgacggaacttgctctccgaaacagcttcgaaggtttagttta |
3393663 |
T |
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| Q |
201 |
gcactccaagaagc |
214 |
Q |
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| T |
3393662 |
gcactagaagaagc |
3393649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 35761616 - 35761698
Alignment:
| Q |
12 |
ggttgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatgga |
94 |
Q |
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||||| || |||||||||| ||| || ||||| | |||||| |||||||||| |||||||||||| || |||||||||||||| |
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| T |
35761616 |
ggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatgga |
35761698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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