View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18635_low_2 (Length: 714)

Name: NF18635_low_2
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18635_low_2
NF18635_low_2
[»] chr5 (20 HSPs)
chr5 (181-618)||(32848905-32849342)
chr5 (17-108)||(32848756-32848847)
chr5 (635-706)||(32849328-32849399)
chr5 (464-597)||(17258810-17258946)
chr5 (466-604)||(10125638-10125779)
chr5 (556-596)||(39257322-39257362)
chr5 (548-603)||(10771809-10771864)
chr5 (450-516)||(37588370-37588437)
chr5 (536-592)||(32172735-32172791)
chr5 (536-603)||(499652-499719)
chr5 (547-598)||(10391435-10391486)
chr5 (455-517)||(15074758-15074821)
chr5 (556-603)||(36542207-36542254)
chr5 (450-516)||(37526209-37526276)
chr5 (457-528)||(18543193-18543266)
chr5 (356-406)||(38105013-38105063)
chr5 (557-603)||(41535025-41535071)
chr5 (539-592)||(11095427-11095480)
chr5 (538-603)||(14331450-14331515)
chr5 (536-597)||(15015926-15015986)
[»] chr3 (17 HSPs)
chr3 (243-315)||(29055980-29056052)
chr3 (21-87)||(29056167-29056233)
chr3 (542-603)||(41057243-41057304)
chr3 (536-603)||(45590733-45590800)
chr3 (402-603)||(49465586-49465787)
chr3 (536-593)||(50211817-50211874)
chr3 (456-581)||(30573857-30573985)
chr3 (543-598)||(22667492-22667547)
chr3 (543-598)||(22724131-22724186)
chr3 (536-603)||(24158437-24158504)
chr3 (536-603)||(36189711-36189778)
chr3 (536-603)||(44014719-44014786)
chr3 (537-603)||(11253584-11253650)
chr3 (538-592)||(25459562-25459616)
chr3 (368-405)||(45554879-45554916)
chr3 (361-398)||(46434750-46434787)
chr3 (361-406)||(48387455-48387500)
[»] chr8 (21 HSPs)
chr8 (464-603)||(4560509-4560651)
chr8 (401-516)||(4558743-4558858)
chr8 (401-520)||(31862438-31862557)
chr8 (536-603)||(2487929-2487996)
chr8 (537-592)||(31884872-31884927)
chr8 (537-597)||(3953885-3953945)
chr8 (536-592)||(7918713-7918769)
chr8 (536-596)||(24326113-24326173)
chr8 (536-603)||(11376785-11376852)
chr8 (536-587)||(13652298-13652349)
chr8 (536-587)||(13710941-13710992)
chr8 (536-603)||(16162842-16162909)
chr8 (536-603)||(43045646-43045712)
chr8 (539-602)||(43385725-43385788)
chr8 (540-598)||(43504837-43504895)
chr8 (536-593)||(1664451-1664508)
chr8 (356-405)||(2833481-2833530)
chr8 (538-575)||(14242980-14243017)
chr8 (542-603)||(29417532-29417593)
chr8 (354-411)||(31118853-31118910)
chr8 (457-494)||(34551120-34551157)
[»] chr2 (13 HSPs)
chr2 (448-603)||(40158709-40158867)
chr2 (536-603)||(43530032-43530099)
chr2 (366-406)||(12313322-12313362)
chr2 (547-603)||(18179161-18179217)
chr2 (536-603)||(4350772-4350839)
chr2 (536-603)||(12313094-12313161)
chr2 (536-603)||(22878180-22878247)
chr2 (536-603)||(43259917-43259984)
chr2 (556-598)||(25609898-25609940)
chr2 (537-603)||(32364652-32364718)
chr2 (562-603)||(30990360-30990401)
chr2 (536-593)||(31982381-31982438)
chr2 (544-593)||(37276834-37276883)
[»] chr1 (19 HSPs)
chr1 (537-598)||(32958720-32958781)
chr1 (536-603)||(9507313-9507380)
chr1 (537-596)||(31517668-31517727)
chr1 (542-603)||(6292580-6292641)
chr1 (496-598)||(10199334-10199438)
chr1 (358-406)||(48064181-48064229)
chr1 (536-603)||(2295179-2295245)
chr1 (556-603)||(6659782-6659829)
chr1 (536-603)||(7252541-7252608)
chr1 (560-603)||(13037965-13038008)
chr1 (547-594)||(15581347-15581394)
chr1 (536-603)||(18327067-18327134)
chr1 (536-591)||(32515374-32515429)
chr1 (536-603)||(49517151-49517218)
chr1 (557-603)||(1730962-1731008)
chr1 (357-411)||(2194473-2194526)
chr1 (537-603)||(23373234-23373300)
chr1 (557-594)||(2832075-2832112)
chr1 (546-603)||(5082917-5082974)
[»] chr7 (12 HSPs)
chr7 (355-406)||(46945764-46945815)
chr7 (536-598)||(529444-529506)
chr7 (537-598)||(10079265-10079326)
chr7 (359-406)||(425971-426018)
chr7 (536-603)||(3836604-3836671)
chr7 (556-603)||(29363610-29363657)
chr7 (560-603)||(30754449-30754492)
chr7 (537-603)||(1418502-1418568)
chr7 (538-591)||(5288195-5288248)
chr7 (558-603)||(7513663-7513708)
chr7 (556-593)||(8094408-8094445)
chr7 (566-603)||(40252044-40252081)
[»] chr4 (10 HSPs)
chr4 (456-517)||(35405946-35406008)
chr4 (536-603)||(46152858-46152925)
chr4 (536-599)||(49939876-49939938)
chr4 (557-603)||(1075561-1075607)
chr4 (359-405)||(17823012-17823058)
chr4 (449-517)||(7694019-7694088)
chr4 (536-581)||(22471356-22471401)
chr4 (574-603)||(27329997-27330026)
chr4 (361-406)||(47771871-47771916)
chr4 (450-565)||(50799989-50800106)
[»] chr6 (5 HSPs)
chr6 (541-593)||(35070398-35070450)
chr6 (355-406)||(7946023-7946074)
chr6 (459-602)||(2455812-2455958)
chr6 (538-599)||(7351596-7351657)
chr6 (361-406)||(17241384-17241429)
[»] scaffold0199 (1 HSPs)
scaffold0199 (536-593)||(6892-6949)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 181 - 618
Target Start/End: Original strand, 32848905 - 32849342
Alignment:
Q  181 cgttatatttacgtgaaagaaaatcggttttgatttcaggttcgtcggatataaagaatcttttggataagcttgtggtgttgaagcttaatggaggctt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32848905 cgttatatttacgtgaaagaaaatcggttttgatttcaggttcgtcggatataaagaatcttttggataagcttgtggtgttgaagcttaatggaggctt 32849004  T
Q  281 ggggacaactatgggttgcactggtccaaagtatgtatatgttgcctatgcatgaaattctatttgagatttgatatttaggccttgtttggataagcat 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849005 ggggacaactatgggttgcactggtccaaagtatgtatatgttgcctatgcatgaaattctatttgagatttgatatttaggccttgtttggataagcat 32849104  T
Q  381 cttattttgcagcttatagcataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849105 cttattttgcagcttatagcataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatc 32849204  T
Q  481 ctggagagcatatggaataaactgaaaacagcttatgcatgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagat 580  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  32849205 ctggagagcatatggaataaactgaaaacagcttatgtgtgtcataagtttttttcataagttctcccaaacagcctcacaagtgcttatgatagtagat 32849304  T
Q  581 aagcttaaataagccaattcaaagttcaaacaggccct 618  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32849305 aagcttaaataagtcaattcaaagttcaaacaggccct 32849342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 32848756 - 32848847
Alignment:
Q  17 agaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctgctggtaattaaatattaacga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32848756 agaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctgctggtaattaaatattaacga 32848847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 635 - 706
Target Start/End: Original strand, 32849328 - 32849399
Alignment:
Q  635 gttcaaacaggcccttagatcatatatgatattgattaattgttaatatcctgtttttagaacttgatgatg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849328 gttcaaacaggcccttagatcatatatgatattgattaattgttaatatcctgtttttagaacttgatgatg 32849399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 464 - 597
Target Start/End: Complemental strand, 17258946 - 17258810
Alignment:
Q  464 tgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcac 560  Q
    ||||||| |||  ||||||| ||||| |||| || ||| ||||||||||||||||  |||||||||||       |||| ||||||||||| ||  ||||    
T  17258946 tgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcac 17258847  T
Q  561 aagtgcttatgatagtagataagcttaaataagccaa 597  Q
    ||||||||||| |||| |||||||| |||||||||||    
T  17258846 aagtgcttatgttagttgataagctcaaataagccaa 17258810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 604
Target Start/End: Complemental strand, 10125779 - 10125638
Alignment:
Q  466 ttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaa 562  Q
    ||||| ||||||| | |||||||| |||| || ||| ||||||||| |||||   |||||||||||       ||||||||||| || ||||  ||||||    
T  10125779 ttttcataagttaccatggagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaa 10125680  T
Q  563 gtgcttatgatagtagataagcttaaataagccaattcaaag 604  Q
    ||||| |||  |||||||||||||||||||||||||| ||||    
T  10125679 gtgctcatgtcagtagataagcttaaataagccaatttaaag 10125638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 596
Target Start/End: Complemental strand, 39257362 - 39257322
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagcca 596  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  39257362 ctcacaagtgcttatgttagtagataagcttaaataagcca 39257322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 603
Target Start/End: Complemental strand, 10771864 - 10771809
Alignment:
Q  548 caaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||| ||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  10771864 caaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 37588437 - 37588370
Alignment:
Q  450 tatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttat 516  Q
    |||| |||||| ||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||    
T  37588437 tataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 592
Target Start/End: Original strand, 32172735 - 32172791
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 592  Q
    |||||| |||||||||| | |||||||||||||||| ||||| ||||||| ||||||    
T  32172735 cataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 499719 - 499652
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||||| ||| ||| |||||||||  ||||| |||||| ||||||| |||| ||||    
T  499719 cataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaataagtcaatccaaa 499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 598
Target Start/End: Original strand, 10391435 - 10391486
Alignment:
Q  547 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    |||||||| |||||||||| |||||  || ||||||||||||||||||||||    
T  10391435 ccaaacaatctcacaagtgattatgccagcagataagcttaaataagccaat 10391486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 15074821 - 15074758
Alignment:
Q  455 gctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg 517  Q
    |||||| ||||||||| |||||||| ||||| ||| ||||||| ||| ||||||||||||||||    
T  15074821 gctataagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttatg 15074758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 603
Target Start/End: Complemental strand, 36542254 - 36542207
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||||||    
T  36542254 ctcataagtgcttatgttagtagataagctcaaacaagccaattcaaa 36542207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 37526276 - 37526209
Alignment:
Q  450 tatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttat 516  Q
    |||| |||||| ||||||||| |||||| | ||||||||| ||||||| ||| |||||||||||||||    
T  37526276 tataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 528
Target Start/End: Complemental strand, 18543266 - 18543193
Alignment:
Q  457 tatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttatg--catgtcataag 528  Q
    |||| ||||||||| |||| ||||||||||||| |||| ||||| ||||||||| || |||  |||||||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaataagctgaaaacaactcatggacatgtcataag 18543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 38105063 - 38105013
Alignment:
Q  356 atttaggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||| |||| ||||||||||| || |||||||||||||||||||| |||||    
T  38105063 atttgggccctgtttggataaacaacttattttgcagcttatagcgtaagc 38105013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 603
Target Start/End: Complemental strand, 41535071 - 41535025
Alignment:
Q  557 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||  ||||||| |||| |||||||||||||||||    
T  41535071 tcacaagtgcttatggcagtagatgagctcaaataagccaattcaaa 41535025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 592
Target Start/End: Complemental strand, 11095480 - 11095427
Alignment:
Q  539 aagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 592  Q
    |||||||| |||||||  ||||||||| |||||  |||||||||||||||||||    
T  11095480 aagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataa 11095427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Original strand, 14331450 - 14331515
Alignment:
Q  538 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| | |||||||| ||||  ||||||||||| |||||||||||| ||||||| |||| ||||    
T  14331450 taagtttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaa 14331515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 597
Target Start/End: Original strand, 15015926 - 15015986
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaa 597  Q
    ||||||||||||||||||  |||||||  |||||||  |||||||||||| |||||||||||    
T  15015926 cataagttctcccaaacagtctcacaaa-gcttatgtcagtagataagctcaaataagccaa 15015986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 29056052 - 29055980
Alignment:
Q  243 ttggataagcttgtggtgttgaagcttaatggaggcttggggacaactatgggttgcactggtccaaagtatg 315  Q
    ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  29056052 ttggacaagcttgttgttttgaagcttaatggaggattggggacaactatgggctgcactggtccaaagtatg 29055980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 29056233 - 29056167
Alignment:
Q  21 tggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctg 87  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||||| | |||||| ||||||||||    
T  29056233 tggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctg 29056167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 41057243 - 41057304
Alignment:
Q  542 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||  ||||||||||||||||   ||||||||||| |||||||||||||||||    
T  41057243 ttctcccaaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaattcaaa 41057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 45590733 - 45590800
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| |||||||||||  |||||||||||||||| ||||||||||| | ||| ||| |||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaa 45590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 603
Target Start/End: Complemental strand, 49465787 - 49465586
Alignment:
Q  402 taagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taa 500  Q
    ||||||||||| |||| ||||||| ||| ||| ||||  | |||| |||||| |||| ||||||||||| |||| ||| ||||||| | ||||||| |||    
T  49465787 taagctatttttataacaaaagataaaataaagttaa--tttttttcgtata-gctaaatgttgttttcataagctatactggagaacttatggaaataa 49465691  T
Q  501 actgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
     || |||| | || |||  ||||| |||||       |||||||||||| ||||||  ||||||||||||||| ||||| |||| || ||||||| ||||    
T  49465690 gcttaaaaaacctaatgaacatgtaataagctgttttcataagttctccgaaacaatatcacaagtgcttatggtagtaaataaactgaaataagtcaat 49465591  T
Q  599 tcaaa 603  Q
     ||||    
T  49465590 ccaaa 49465586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 50211817 - 50211874
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    ||||||||||| ||||||  || ||||||||||||| ||||||||||||| |||||||    
T  50211817 cataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataag 50211874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 581
Target Start/End: Complemental strand, 30573985 - 30573857
Alignment:
Q  456 ctatatgttgttttcttaagttatcctggagagcatatgga-ataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaac 552  Q
    ||||||| ||||||| |||| |||| ||||||||  ||| | |||| ||||||||||||||||  |||| |||||        ||||||||||| |||||    
T  30573985 ctatatgatgttttcataagctatcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctcacaaac 30573886  T
Q  553 aacctcacaagtgcttatgatagtagata 581  Q
    || ||||||||||||||||  ||||||||    
T  30573885 aaactcacaagtgcttatgtcagtagata 30573857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 22667492 - 22667547
Alignment:
Q  543 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    |||| ||||||  ||||||||||||||||  |||||||||||| ||||||||||||    
T  22667492 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22667547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 22724131 - 22724186
Alignment:
Q  543 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    |||| ||||||  ||||||||||||||||  |||||||||||| ||||||||||||    
T  22724131 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 24158504 - 24158437
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| |||| ||||||   |||||||| ||||||  ||||||||||||||||||||||||| ||||    
T  24158504 cataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaa 24158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 36189711 - 36189778
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||  |||||||  |||||||||||||||  ||||| ||||||| ||||||| |||||||||    
T  36189711 cataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaattcaaa 36189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 44014786 - 44014719
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||| || ||||||  |||||||||| ||||| |||||||||| || |||||||||||| ||||    
T  44014786 cataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 44014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 11253584 - 11253650
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||| |||| |||||||  ||| |||||||||||| |||||||||| || ||||||| |||||||||    
T  11253584 ataaattctgccaaacagtctctcaagtgcttatgctagtagataatctcaaataagtcaattcaaa 11253650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 592
Target Start/End: Complemental strand, 25459616 - 25459562
Alignment:
Q  538 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 592  Q
    |||| ||| |||||||| |||||||||||||||| |||| |||||||| ||||||    
T  25459616 taagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataa 25459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 45554879 - 45554916
Alignment:
Q  368 tttggataagcatcttattttgcagcttatagcataag 405  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  45554879 tttggataaacatcttattttgtagcttatagcataag 45554916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 46434787 - 46434750
Alignment:
Q  361 ggccttgtttggataagcatcttattttgcagcttata 398  Q
    |||||||||||||||| || ||||||||||||||||||    
T  46434787 ggccttgtttggataaacaacttattttgcagcttata 46434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 48387500 - 48387455
Alignment:
Q  361 ggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||||||||||||||| || ||||||||||| |||||| |||||||    
T  48387500 ggccttgtttggataaacaacttattttgcatcttataacataagc 48387455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 603
Target Start/End: Original strand, 4560509 - 4560651
Alignment:
Q  464 tgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagctta-tg-catgtcataagnnnnnnncataagttctcccaaacaacctcac 560  Q
    |||||||||||| ||||||  ||||| ||| ||| ||| |||||||||||||| || ||||| |||||       |||||||||| ||||||||||||||    
T  4560509 tgttttcttaaggtatcctcaagagcttatcgaaataatctgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcac 4560608  T
Q  561 aagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||  | |||||||||| ||||||| |||| ||||    
T  4560609 aagtgcttatgtcaatagataagctcaaataagtcaatccaaa 4560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 516
Target Start/End: Original strand, 4558743 - 4558858
Alignment:
Q  401 ataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatgg-aata 499  Q
    |||||||||||  |||||||||||| ||| ||| ||||| |||||| | ||||||||||| | ||||| | |||| |||||| |||||| ||||| ||||    
T  4558743 ataagctatttctataataaaagataaaataaagttaaattatttt-catatatgctataagctgtttccataagctatcctagagagcttatggaaata 4558841  T
Q  500 aactgaaaacagcttat 516  Q
    |||| |||||| |||||    
T  4558842 aactaaaaacaacttat 4558858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 520
Target Start/End: Original strand, 31862438 - 31862557
Alignment:
Q  401 ataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatg-gaata 499  Q
    ||||| ||||| ||||| ||||||| | | ||| | |||||||| | |||||| |||||| | ||||||| ||||||||||| |||||| ||||  ||||    
T  31862438 ataagttatttcaataacaaaagataatataaagtcaaactattct-cgtataagctataagatgttttcataagttatcctagagagcttatgaaaata 31862536  T
Q  500 aactgaaaacagcttatgcat 520  Q
    | |||||||||||||||||||    
T  31862537 agctgaaaacagcttatgcat 31862557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 2487996 - 2487929
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||| | || |||||||||||| ||||    
T  2487996 cataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 537 - 592
Target Start/End: Complemental strand, 31884927 - 31884872
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 592  Q
    ||||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||    
T  31884927 ataagttttcccaaacactctcacaagtgcttatgctagtagataagctcaaataa 31884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 3953885 - 3953945
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaa 597  Q
    |||||||||||||||||   |||||||||||||||  |||||||| ||| |||||||||||    
T  3953885 ataagttctcccaaacagtttcacaagtgcttatgccagtagataggctcaaataagccaa 3953945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 592
Target Start/End: Complemental strand, 7918769 - 7918713
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 592  Q
    |||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  7918769 cataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa 7918713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 24326113 - 24326173
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagcca 596  Q
    |||||| |||||||||||  ||||||||||||||||  |||||||||||| |||| |||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaattagcca 24326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 11376785 - 11376852
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||| |  ||||||||  |||||   |||||||||||| |||||||||||||||||    
T  11376785 cataagttctcccaaatagtctcacaagaacttatatcagtagataagctcaaataagccaattcaaa 11376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 13652298 - 13652349
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagctta 587  Q
    |||||| ||| |||||||||||||||||||||||||  ||||||||| ||||    
T  13652298 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaactta 13652349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 13710941 - 13710992
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagctta 587  Q
    |||||| ||| |||||||||||||||||||||||||  ||||||||| ||||    
T  13710941 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaactta 13710992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 16162842 - 16162909
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||| || ||||||  |||||||||| ||||| |||||||||| || |||||||||||| ||||    
T  16162842 cataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 16162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 43045712 - 43045646
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| ||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||| ||||    
T  43045712 cataagatctccaaaacagtctcacaaat-cttatgctagtagataagcttaaataagccaatccaaa 43045646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 43385725 - 43385788
Alignment:
Q  539 aagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaa 602  Q
    ||||||| |||||||  |||||| |||||||||  |||||||||||||| ||||| ||||||||    
T  43385725 aagttcttccaaacagtctcacaggtgcttatgccagtagataagcttagataagtcaattcaa 43385788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 43504837 - 43504895
Alignment:
Q  540 agttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    |||||||| |||||  | |||||||||||| |  |||||||||||||||||||||||||    
T  43504837 agttctccgaaacagtcacacaagtgcttaagccagtagataagcttaaataagccaat 43504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 1664451 - 1664508
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    |||||| |||||||||||  |||||||||| ||||| |||||||||| || |||||||    
T  1664451 cataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 1664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 2833530 - 2833481
Alignment:
Q  356 atttaggccttgtttggataagcatcttattttgcagcttatagcataag 405  Q
    ||||| ||| ||||||||||| |  |||||||||||||||||||||||||    
T  2833530 atttaagccatgtttggataaactgcttattttgcagcttatagcataag 2833481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 14242980 - 14243017
Alignment:
Q  538 taagttctcccaaacaacctcacaagtgcttatgatag 575  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  14242980 taagttctctcaaacaatctcacaagtgcttatgatag 14243017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 29417593 - 29417532
Alignment:
Q  542 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||| |||||| ||||||||||| |||||   || |||||||| |||||||||||||||||    
T  29417593 ttctctcaaacagcctcacaagtgtttatgtcggtcgataagctaaaataagccaattcaaa 29417532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 31118910 - 31118853
Alignment:
Q  354 atatttaggccttgtttggataagcatcttattttgcagcttatagcataagctattt 411  Q
    |||||||  |||||||||||||| || |||| | ||||||||||||||||||| ||||    
T  31118910 atatttaaaccttgtttggataaacaacttaatgtgcagcttatagcataagccattt 31118853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 34551120 - 34551157
Alignment:
Q  457 tatatgttgttttcttaagttatcctggagagcatatg 494  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  34551120 tataagttgttttcttaagttatcctggagagcttatg 34551157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 603
Target Start/End: Original strand, 40158709 - 40158867
Alignment:
Q  448 cgtatatgctatatgttgttttcttaagttatcctggagagcatatggaataaa-ctgaaaacagcttatg--catgtcataagnnnnnnncataagttc 544  Q
    |||||| || ||| ||||||||| |||||||| ||||||||| |||| ||| || ||||||||| |||||   |||||||||||       |||||||||    
T  40158709 cgtataagcaataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T
Q  545 tcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
     ||||| ||  ||||||||| ||||||  |||||||| ||| |||||||||||| ||||    
T  40158809 ccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagccaatccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 43530099 - 43530032
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||| ||  ||||||||||| |||| |||||||| |||| ||||||||||| |||||    
T  43530099 cataagttctcccaagcactctcacaagtgcatatgttagtagattagctcaaataagccaaatcaaa 43530032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 12313362 - 12313322
Alignment:
Q  366 tgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  12313362 tgtttggataaacatcttattttgcagcttatagtataagc 12313322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 603
Target Start/End: Complemental strand, 18179217 - 18179161
Alignment:
Q  547 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||| || |||||||||||||  | ||||||||||||||||||||||| ||||    
T  18179217 ccaaacaaacttacaagtgcttatgtaactagataagcttaaataagccaatccaaa 18179161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 4350772 - 4350839
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||| ||||||| |||  |||||||||||  |||||| ||||| |||||||||||| ||||    
T  4350772 cataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaa 4350839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 12313161 - 12313094
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||| ||||||||||||| |||||||||||||||| |||| | |||| | |||||||| ||| ||||    
T  12313161 cataaattctcccaaacaatctcacaagtgcttatgctagtgggtaagatcaaataagctaatacaaa 12313094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 22878180 - 22878247
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| |||||||||||  ||||||||||||||||  ||| |||||||| ||||||| |||| ||||    
T  22878180 cataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 43259917 - 43259984
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||| |||| ||||   ||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  43259917 cataagttttcccgaacattgtcacaagtgcttatgctagtagataagttcaaataagccaatccaaa 43259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 598
Target Start/End: Original strand, 25609898 - 25609940
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||    
T  25609898 ctcacaagttcttatgttagtagataagctcaaataagccaat 25609940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 32364718 - 32364652
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||  || ||||||| |||| ||||    
T  32364718 ataagctctcccaaacaatttcacaaatgcttatgatagtagatattctcaaataagtcaatccaaa 32364652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 603
Target Start/End: Complemental strand, 30990401 - 30990360
Alignment:
Q  562 agtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||| ||||||||||||| |||||||||||| ||||    
T  30990401 agtgcttatgttagtagataagctcaaataagccaatccaaa 30990360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 31982381 - 31982438
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    |||||||||||||||| |   ||||| ||||||||| |||||| ||||||||||||||    
T  31982381 cataagttctcccaaatagtgtcacaggtgcttatgttagtaggtaagcttaaataag 31982438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 37276834 - 37276883
Alignment:
Q  544 ctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    ||||||||||  |||||||||||||||  |||||||||| ||||||||||    
T  37276834 ctcccaaacagtctcacaagtgcttatattagtagataaacttaaataag 37276883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 32958720 - 32958781
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||| ||||||| ||||    
T  32958720 ataagctctccaaaataacctcacaagtgcttatgacagtagataagctcaaataagtcaat 32958781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 9507313 - 9507380
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| |||||||||||  ||||||| ||| |||| ||||||||||||| |||||||| ||||||||    
T  9507313 cataagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaataagcaaattcaaa 9507380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 31517727 - 31517668
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagcca 596  Q
    |||||||||||||||||  ||||||||||||||||  |||| ||||||| ||||||||||    
T  31517727 ataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataagcca 31517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 6292580 - 6292641
Alignment:
Q  542 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||| |||| |||||||||||  |||||||||||| ||||||| |||| ||||    
T  6292580 ttctcccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 598
Target Start/End: Complemental strand, 10199438 - 10199334
Alignment:
Q  496 aataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    ||||| ||||||||| ||||||  |||||||||||       ||| |||||||||||| |   ||||||||||||||| ||||||||||||| |||||||    
T  10199438 aataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataag 10199339  T
Q  594 ccaat 598  Q
     ||||    
T  10199338 tcaat 10199334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 48064181 - 48064229
Alignment:
Q  358 ttaggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    ||||||| ||||||||||| || |||| |||||||||||||||||||||    
T  48064181 ttaggccatgtttggataaacaacttaatttgcagcttatagcataagc 48064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 2295179 - 2295245
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||||  |||||||   ||||||  |||||||||||| |||||||||||||||||    
T  2295179 cataagttctcccaaacagtctcacaaaa-cttatgccagtagataagctcaaataagccaattcaaa 2295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 6659782 - 6659829
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  6659782 ctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaa 6659829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 7252608 - 7252541
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||||   || ||||| |||||| |||||||| |||| |||||||| ||||||||    
T  7252608 cataagttctcccaaacagtttctcaagtacttatgttagtagattagctcaaataagctaattcaaa 7252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 603
Target Start/End: Original strand, 13037965 - 13038008
Alignment:
Q  560 caagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    
T  13037965 caagtgcttatgatagtggatatgctcaaataagccaattcaaa 13038008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 594
Target Start/End: Original strand, 15581347 - 15581394
Alignment:
Q  547 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagc 594  Q
    |||||||| ||||||||||||||||  |||||||||||| ||||||||    
T  15581347 ccaaacaatctcacaagtgcttatgtcagtagataagctaaaataagc 15581394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 18327134 - 18327067
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||| ||||| |   ||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  18327134 cataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 32515429 - 32515374
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaata 591  Q
    |||||| |||||||||||  |||||||||||||||| |||||||||| || |||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 49517151 - 49517218
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| ||||||||||||   |||||| ||||||  ||||||||||| ||||||||| |||||||||    
T  49517151 cataagctctcccaaacaaaaccacaagcgcttatactagtagataagtttaaataagtcaattcaaa 49517218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 603
Target Start/End: Original strand, 1730962 - 1731008
Alignment:
Q  557 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  1730962 tcacaagtgcttatggttgtagataagcttatataagccaatccaaa 1731008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 2194526 - 2194473
Alignment:
Q  357 tttaggccttgtttggataagcatcttattttgcagcttatagcataagctattt 411  Q
    |||||||| ||||||||||| || |||| |||||||||||| |||||||||||||    
T  2194526 tttaggccctgtttggataaacagcttaatttgcagcttat-gcataagctattt 2194473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 23373300 - 23373234
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||| |||||||||||| |||||||||||||||   |||||| ||| | ||||||| |||||||||    
T  23373300 ataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaa 23373234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 594
Target Start/End: Original strand, 2832075 - 2832112
Alignment:
Q  557 tcacaagtgcttatgatagtagataagcttaaataagc 594  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  2832075 tcacaagtgcttatgctagtagataagctcaaataagc 2832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 603
Target Start/End: Original strand, 5082917 - 5082974
Alignment:
Q  546 cccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||| | |||||||||||||| | |||||||||| | |||||||||||| ||||    
T  5082917 cccaaacagcttcacaagtgcttataaaagtagataagttcaaataagccaatccaaa 5082974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 46945764 - 46945815
Alignment:
Q  355 tatttaggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||||||||||||||||||||| || |||| ||||||||||||||| |||||    
T  46945764 tatttaggccttgtttggataaacaacttagtttgcagcttatagcttaagc 46945815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 598
Target Start/End: Original strand, 529444 - 529506
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    |||||||||||||||| | ||||||||||| |||||  |||||||||||| ||||||| ||||    
T  529444 cataagttctcccaaatagcctcacaagtgtttatgccagtagataagctcaaataagtcaat 529506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 10079326 - 10079265
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 598  Q
    ||||| ||||||||||||||||| ||||| ||||| | ||| ||||||| ||||||||||||    
T  10079326 ataagctctcccaaacaacctcataagtgtttatgctcgtaaataagctcaaataagccaat 10079265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 426018 - 425971
Alignment:
Q  359 taggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||||| |||||||||||  | ||||||||||||||||||||||||||    
T  426018 taggccctgtttggataaataacttattttgcagcttatagcataagc 425971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 3836671 - 3836604
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||||   ||||||||||||| |  |||||||||||| ||||||| |||| ||||    
T  3836671 cataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaa 3836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 29363610 - 29363657
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  29363610 ctcacaagtgcttatgttagtagataagttcaaataagccaatccaaa 29363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 603
Target Start/End: Complemental strand, 30754492 - 30754449
Alignment:
Q  560 caagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||    
T  30754492 caagtgcttatgatagtagaaaagtttaaataagtcaattcaaa 30754449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 1418502 - 1418568
Alignment:
Q  537 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||| |||| |||||| ||||| |||||||||||  |||||||||||| ||||||| |||| ||||    
T  1418502 ataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 5288195 - 5288248
Alignment:
Q  538 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaata 591  Q
    ||||||||||||||||  |||| ||||||||||| |||||||| |||| |||||    
T  5288195 taagttctcccaaacagtctcataagtgcttatgctagtagattagctcaaata 5288248  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 603
Target Start/End: Original strand, 7513663 - 7513708
Alignment:
Q  558 cacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||    
T  7513663 cacaagtgcttatgccagtagataagctcaaataagtcaattcaaa 7513708  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 593
Target Start/End: Original strand, 8094408 - 8094445
Alignment:
Q  556 ctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  8094408 ctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 40252081 - 40252044
Alignment:
Q  566 cttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  40252081 cttatgctagtagataagctcaaataagccaattcaaa 40252044  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 35405946 - 35406008
Alignment:
Q  456 ctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg 517  Q
    ||||| |||||||||  ||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  35405946 ctataggttgttttcaaaagttatcctggagagcttatggaagtaagctgaaaacagcttatg 35406008  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 603
Target Start/End: Original strand, 46152858 - 46152925
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    |||||| |||||||||||  ||||| | ||||||||| ||||||||| ||| ||||| ||||||||||    
T  46152858 cataagctctcccaaacattctcacgattgcttatgacagtagataaccttgaataatccaattcaaa 46152925  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 599
Target Start/End: Complemental strand, 49939938 - 49939876
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaatt 599  Q
    |||||||||| ||||| |  |||||||  ||||||| |||||||||||||||||||||||||||    
T  49939938 cataagttcttccaaatagtctcacaaa-gcttatgctagtagataagcttaaataagccaatt 49939876  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 603
Target Start/End: Original strand, 1075561 - 1075607
Alignment:
Q  557 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 603  Q
    ||||||||| |||||  |||||||||||| |||||||||||||||||    
T  1075561 tcacaagtgtttatgccagtagataagctcaaataagccaattcaaa 1075607  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 17823012 - 17823058
Alignment:
Q  359 taggccttgtttggataagcatcttattttgcagcttatagcataag 405  Q
    |||||||||||||||||| || |||| ||||||||| ||||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataag 17823058  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 517
Target Start/End: Complemental strand, 7694088 - 7694019
Alignment:
Q  449 gtatatgctatatgttgttttcttaagttatcctggagagcatatgg-aataaactgaaaacagcttatg 517  Q
    ||||| |||||| | ||||||| |||||||||||||||||  ||||| ||||| ||||||||| ||||||    
T  7694088 gtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatg 7694019  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 22471356 - 22471401
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagata 581  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||    
T  22471356 cataagttctcccaaacagtctcacaagtgcttatgtcagtagata 22471401  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 603
Target Start/End: Complemental strand, 27330026 - 27329997
Alignment:
Q  574 agtagataagcttaaataagccaattcaaa 603  Q
    ||||||||||||||||||||||||||||||    
T  27330026 agtagataagcttaaataagccaattcaaa 27329997  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 47771871 - 47771916
Alignment:
Q  361 ggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||| ||||||||||| || ||||||||| ||||||||||||||||    
T  47771871 ggccctgtttggataaacagcttattttggagcttatagcataagc 47771916  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 50800106 - 50799989
Alignment:
Q  450 tatatgctatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcc 547  Q
    |||| |||||| | |||||||||||| |||| |||||| | |  | ||||| |||||||||||||||   |||||||||||       ||| ||||||||    
T  50800106 tataagctataagctgttttcttaagctatcatggagaactttggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctcc 50800007  T
Q  548 caaacaacctcacaagtg 565  Q
    ||||||| ||||||||||    
T  50800006 caaacaatctcacaagtg 50799989  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 35070450 - 35070398
Alignment:
Q  541 gttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    |||||||||||||  | |||||||||||||| ||||||||||||| |||||||    
T  35070450 gttctcccaaacagtcccacaagtgcttatgttagtagataagctcaaataag 35070398  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 7946074 - 7946023
Alignment:
Q  355 tatttaggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||||| ||| ||||||||||| || ||||||||| ||||||||||||||||    
T  7946074 tatttaagccctgtttggataaacaacttattttgtagcttatagcataagc 7946023  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 602
Target Start/End: Original strand, 2455812 - 2455958
Alignment:
Q  459 tatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaac 555  Q
    |||||| ||||| |||| |||| |||||||| ||||||| |||  |||||| || |||||  |||||||||||       |||||| ||| | ||||||     
T  2455812 tatgttattttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaat 2455911  T
Q  556 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaa 602  Q
    ||| ||||||||||||   ||||||||||| ||||||| ||||||||    
T  2455912 ctcgcaagtgcttatgccggtagataagctcaaataagtcaattcaa 2455958  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 7351657 - 7351596
Alignment:
Q  538 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaatt 599  Q
    |||||||||  |||||| ||||||||||||||||  ||||||||| || ||||||| |||||    
T  7351657 taagttctcataaacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatt 7351596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 17241429 - 17241384
Alignment:
Q  361 ggccttgtttggataagcatcttattttgcagcttatagcataagc 406  Q
    |||| |||||||||||||| | ||||| ||||||||||||||||||    
T  17241429 ggccctgtttggataagcaacatatttggcagcttatagcataagc 17241384  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 6892 - 6949
Alignment:
Q  536 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 593  Q
    |||||| |||||||||||  |||||||||| ||||| |||||||||| || |||||||    
T  6892 cataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 6949  T

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