View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_3 (Length: 637)
Name: NF18635_low_3
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 194 - 619
Target Start/End: Original strand, 36064796 - 36065217
Alignment:
| Q |
194 |
tcctaacgattaatgaccataatttcccactactcaatccgatcttgagatgttataaaattacaaataataatgtgaattgtttttgtatatattgtta |
293 |
Q |
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| T |
36064796 |
tcctaacgattaatgactataatttcccactactcaatccgatcttgagatgttataaaattacaaataataatgtgaattgtttttgtatatattgtta |
36064895 |
T |
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| Q |
294 |
attaaagcaggcgagccatacagaaaagggtggtgcaaatcccaatcaaggaacctcatggatcaaggctaaaaggagagagtaatacaccaccttcaga |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36064896 |
attaaagcaggcgagccatacagaaaagggtggtgcaaatcccaatcaaggaacctcatggatcaaggctaaaaggagagagtaatacaccaccttcaga |
36064995 |
T |
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| Q |
394 |
ttcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggtatgtatgtatgtataaatataatctaatgtaatgtagcaag |
493 |
Q |
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| T |
36064996 |
ttcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccag----gtatgtatgtataaatataatctaatgtaatgtagcaag |
36065091 |
T |
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| Q |
494 |
caactagcaactaattaaacatactgtcatataaaataaaaatgcatcttatatgcatagatcatgacaagcatatttggtaattttaaggtttgtgtga |
593 |
Q |
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| T |
36065092 |
caactagcaactaattaaacatactgtcatataaaataaaaatgcatcttatatgcatagatcatgacaagcatatttggtaattttaaggtttgtgtga |
36065191 |
T |
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| Q |
594 |
aagtagaagaaactgaaagtaggttt |
619 |
Q |
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| T |
36065192 |
aagtagaagaaactgaaagtaggttt |
36065217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 36064586 - 36064763
Alignment:
| Q |
11 |
aagaatatgaaaagaaaattcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaaca |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36064586 |
aagaaaatgaaaagaaaattcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaaca |
36064685 |
T |
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| Q |
111 |
tcgatggctcagtcacttcccactcttcttcatcatctaagaaaaggttagtacactgtacacacacttatactaatta |
189 |
Q |
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| T |
36064686 |
tcgatggctcagtcacttcccactcttcttcatcatctaagaaaaggttagta-gcagtgcacacacttatactaatta |
36064763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 454
Target Start/End: Original strand, 5190450 - 5190528
Alignment:
| Q |
376 |
taatacaccaccttcagattcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggtat |
454 |
Q |
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| T |
5190450 |
taatactccaccgtctgattcatgggcttggagaaagtatggtcagaaacccatcaaaggttccccttatccaaggtat |
5190528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 12166382 - 12166315
Alignment:
| Q |
386 |
ccttcagattcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggta |
453 |
Q |
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|||||||||| ||||| |||||||||||||| ||||| || || |||||||| |||||||| ||||| |
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| T |
12166382 |
ccttcagatttgtgggcttggagaaaatatggtcagaagcctattaaaggttcaccttatccaaggta |
12166315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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