View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_4 (Length: 500)
Name: NF18635_low_4
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_4 |
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| [»] scaffold1152 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 34199586 - 34200059
Alignment:
| Q |
14 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgc---catcaccgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
34199586 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgcagccaccaccgaaa |
34199685 |
T |
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| Q |
111 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatgaaagagaacgctga |
210 |
Q |
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| T |
34199686 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatggaagagaacgctga |
34199785 |
T |
|
| Q |
211 |
gagaatgcataagcttggtttgttaaagctttcttgtaacctcaagaaaacaccaaaaccgcgcccctccgtcaagaaaaactcgttaccatccaacgaa |
310 |
Q |
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| T |
34199786 |
gagaatgcataagcttggtttgttaaagctttctggtaacctcaagaaaacaccaaaaccgcgcccctccgtcaagaaaaactcgttaccatccaacgaa |
34199885 |
T |
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| Q |
311 |
tctgaaagacgttcttctaggtattctattccattctactattttcatttttgcttgcatgtttcatttcatcaatttaatatcgctatttattgcttgt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34199886 |
tctgaaagacgttcttctaggtattctattccattctactattttcatttttgcttgcatgtttcatttcatcaatttaatatcgctatttattgcttgt |
34199985 |
T |
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| Q |
411 |
tggtgttgtgtcggtgttagatatcgacgtatcagacatcagacacacctttaatctgaagtgtatgtgatata |
484 |
Q |
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| T |
34199986 |
tggtgttgtgttggtgttagatatcgacgtatcaaacatcagacacacctttaatctgaagtctatgtgatata |
34200059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1152 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 1772 - 2027
Alignment:
| Q |
11 |
cagagagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggc---gccatcaccg |
107 |
Q |
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| T |
1772 |
cagagagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaa---tcaacttcttctaaccgtgaagatggcagcccagccaccaccg |
1868 |
T |
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| Q |
108 |
aaaccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatgaaagagaacgc |
207 |
Q |
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| T |
1869 |
aaaccaaaacggcgaaaactgacggtgacaaaggtgttgtagttttgggttcatcatcatattacgaatagattagggaacaaaggatgaaagagaacgc |
1968 |
T |
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| Q |
208 |
tgagagaatgcataagcttggtttgttaaagctttcttgtaacctcaagaaaacaccaa |
266 |
Q |
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| T |
1969 |
tgagagaatgcataagcttggattgttaaagctttctggtaacctcaagaaaacaccaa |
2027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 40812075 - 40812248
Alignment:
| Q |
14 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgccatcacc---gaaa |
110 |
Q |
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| T |
40812075 |
agagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaa---tcagcttcttctgacggtgaagatggcagcgcaaccaccaacgaaa |
40812171 |
T |
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| Q |
111 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaa |
187 |
Q |
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| T |
40812172 |
ccaaaacggcgaaaactgacggtgacgaaggtgttgccgtttctggttcatcatcacattacgaacagattagggaa |
40812248 |
T |
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