View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_5 (Length: 428)
Name: NF18635_low_5
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 80 - 413
Target Start/End: Original strand, 45596664 - 45596997
Alignment:
| Q |
80 |
ataaacctcgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagcta |
179 |
Q |
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| T |
45596664 |
ataaaccttgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagcta |
45596763 |
T |
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| Q |
180 |
tagctaccatatcacatatctgcagaaaaagcaacaaattgtaagcttctagcaaaacaacaatttaaaaaacattttaacatctagtgaaattcaaata |
279 |
Q |
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| T |
45596764 |
tagctaccatatcacatatctgcagaaaaagcaacaaattttaagcttctagcaaaacaacaatttaaaaaacattttaacatctaatgaaaatcaaata |
45596863 |
T |
|
| Q |
280 |
caaaagataaattcatgtgaaataagttttggcgttaaaacaaagaaatttcatatcagagtaatataaagagagaaataataccccggcgcgcatttgg |
379 |
Q |
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| T |
45596864 |
caaaagataaattcatgtgaaataagttttggcgttaaaacaaagaaatttcatatcagagtaatataaagagagaaataataccccggcgcgcatttgg |
45596963 |
T |
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| Q |
380 |
ttgagtccaccatttgtatgaactaggaggtaac |
413 |
Q |
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| T |
45596964 |
ttgagtcctccatttgtatgaactaggaggtaac |
45596997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 27152428 - 27152524
Alignment:
| Q |
107 |
tacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagctatagctaccatatcacatatctgca |
203 |
Q |
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| T |
27152428 |
tacctagtatcttgccaaaatgatcttttatcaagttctggaattacaagagtagcatttatgatacgagctacagctaccatatcacatatctgca |
27152524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 27152729 - 27152762
Alignment:
| Q |
371 |
cgcatttggttgagtccaccatttgtatgaacta |
404 |
Q |
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| T |
27152729 |
cgcatttggttgagcccaccatttgtatgaacta |
27152762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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