View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_6 (Length: 423)
Name: NF18635_low_6
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 3879294 - 3879697
Alignment:
| Q |
20 |
ccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggttttgtaactccgcagttgcagt |
119 |
Q |
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| T |
3879294 |
ccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacatttaaccaccccgccaatgcaggttttgtaactccgcagttgcagt |
3879393 |
T |
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| Q |
120 |
ctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaa |
219 |
Q |
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| T |
3879394 |
ctattgacttgagcgtcgttggatcttccacatttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaa |
3879493 |
T |
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| Q |
220 |
agcactataattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttan |
319 |
Q |
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| T |
3879494 |
agcactataattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttat |
3879593 |
T |
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| Q |
320 |
nnnnnngaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatc |
419 |
Q |
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| T |
3879594 |
ttttttgaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatc |
3879693 |
T |
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| Q |
420 |
aata |
423 |
Q |
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| T |
3879694 |
aata |
3879697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 3865314 - 3865513
Alignment:
| Q |
20 |
ccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggttttgtaactccgcagttgcagt |
119 |
Q |
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| T |
3865314 |
ccagatattgatattaacgacttgtctgaattcccgagtattaggacgagtacatgacataact--gccaatgcaggttttggagcttgacaattgcagt |
3865411 |
T |
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| Q |
120 |
ctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaa |
219 |
Q |
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| T |
3865412 |
ctattgacttcggtgtcgttggatcttccacgtttgcagaatattagattggtgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaa |
3865511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 326 - 423
Target Start/End: Original strand, 3865609 - 3865706
Alignment:
| Q |
326 |
gaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaata |
423 |
Q |
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| T |
3865609 |
gaatggtttccttggcagattagcagatttgaatttgagagctatatcgctttcttctatacaagtgtctaactgctctgtactccaccggatcaata |
3865706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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