View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18635_low_7 (Length: 392)
Name: NF18635_low_7
Description: NF18635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18635_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 152 - 385
Target Start/End: Original strand, 5472754 - 5472987
Alignment:
| Q |
152 |
tcacgttctttcacaccaaattcccttaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatggatccatttaacaccaaca |
251 |
Q |
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| T |
5472754 |
tcacgttctttcacaccaaattcccctaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatagatccatttaacaccaaca |
5472853 |
T |
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| Q |
252 |
agtctctccaaacatactcaaaatcaagactatcttctcctaagagtataattgtgaggagcatccagcattgtttttcaagtagagccttgttgaactc |
351 |
Q |
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| T |
5472854 |
agtctctccacacatactcaaaatcaaaactatcttctcctaagagtataattgtgaggagcatccagcattgtttttcaagtagagccttgttgaactc |
5472953 |
T |
|
| Q |
352 |
agagaaccctctcaaccccataccacctttgctt |
385 |
Q |
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| T |
5472954 |
agaaaaccctttcaaccccataccacctttgctt |
5472987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 5472662 - 5472756
Alignment:
| Q |
16 |
tcaatcacctgagtgcattaatcaaaatagactacttttccatcttttgtaaaaaatatacttgctttctttcctactccaaatctccaataggacactc |
115 |
Q |
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| T |
5472662 |
tcaatcacctgagtgcattaatcaaaatagactactt------cttttgtaaaaaatctacttgctttctttcctactccaaatctccaataggacactc |
5472755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 5354259 - 5354137
Alignment:
| Q |
161 |
ttcacaccaaattcccttaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatggatccatttaacaccaacaagtctctcc |
260 |
Q |
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| T |
5354259 |
ttcacaccaaattcagccaaaatagatatttgaaaagcacctaaatttggataatttgaaatcaaagcaagggacccatttaaaaccatcaagtcactta |
5354160 |
T |
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| Q |
261 |
aaacatactcaaaatcaagacta |
283 |
Q |
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||||| | |||| |||||||||| |
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| T |
5354159 |
aaacaaattcaagatcaagacta |
5354137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 5393415 - 5393542
Alignment:
| Q |
141 |
aagagtttaaatcacg-ttctttcacaccaaattcccttaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatggatccat |
239 |
Q |
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||||||||||| || | ||| ||||||||||| || | |||| | |||| || ||| || ||| ||||| ||||||||||||||||||||| || |||| |
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| T |
5393415 |
aagagtttaaaccatgattccttcacaccaaactcacccaaaacatatatttgaaaactacccaaatttgtataatttgaaatcaaagcaatagacccat |
5393514 |
T |
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| Q |
240 |
ttaacaccaacaagtctctccaaacata |
267 |
Q |
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|||| |||| |||||| ||| ||||||| |
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| T |
5393515 |
ttaaaaccatcaagtcactcaaaacata |
5393542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 5442421 - 5442317
Alignment:
| Q |
157 |
ttctttcacaccaaattcccttaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatggatccatttaacaccaacaagtct |
256 |
Q |
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|||||||||||||| ||| | ||||||||||||||| |||||||| | | ||||| ||| || ||||||||| |||||||||| |||| ||||||| |
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| T |
5442421 |
ttctttcacaccaatttcacctaaaatagatatatgaaaagtatcattttgtttataatgtgatattaaagcaatgaatccatttaaaaccaccaagtct |
5442322 |
T |
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| Q |
257 |
ctcca |
261 |
Q |
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|||| |
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| T |
5442321 |
ttcca |
5442317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 5451431 - 5451327
Alignment:
| Q |
157 |
ttctttcacaccaaattcccttaaaatagatatatggaaagtatccacatttgaataatttgaaatcaaagcaatggatccatttaacaccaacaagtct |
256 |
Q |
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|||||||||||||| ||| | ||||||||||||||| |||||||| | | ||||| ||| || ||||||||| |||||||||| |||| ||||||| |
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| T |
5451431 |
ttctttcacaccaatttcacctaaaatagatatatgaaaagtatcattttgtttataatgtgatattaaagcaatgaatccatttaaaaccaccaagtct |
5451332 |
T |
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| Q |
257 |
ctcca |
261 |
Q |
| |
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|||| |
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| T |
5451331 |
ttcca |
5451327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 5352828 - 5352750
Alignment:
| Q |
205 |
atttgaataatttgaaatcaaagcaatggatccatttaacaccaacaagtctctccaaacatactcaaaatcaagactat |
284 |
Q |
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||||| |||||||||||||||||||| ||| |||||||| |||| ||||| || |||||||| ||||||||| ||||| |
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| T |
5352828 |
atttgtataatttgaaatcaaagcaagggacccatttaaaaccattaagtcact-caaacatatccaaaatcaaaactat |
5352750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 32642935 - 32642895
Alignment:
| Q |
221 |
atcaaagcaatggatccatttaacaccaacaagtctctcca |
261 |
Q |
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||||| ||||||||||||||||||||| |||||||||||| |
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| T |
32642935 |
atcaacgcaatggatccatttaacaccgccaagtctctcca |
32642895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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