View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_high_10 (Length: 459)
Name: NF18636_high_10
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 38189727 - 38189299
Alignment:
| Q |
17 |
caaacacctgcatctgtttctaaatataagtactgtttctcagtttctacaaaattaggaagcaacaattatcttgttgatggaagtttcaagacattta |
116 |
Q |
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| T |
38189727 |
caaacacctgcatctgtttctaaatataagtactgtttctcagtttctgcaaaattaggaagcaacaattatcttgttgatggaagtttcaagacattta |
38189628 |
T |
|
| Q |
117 |
taatattgatgaaagaaaaatgatatatttgatactaaatggagtttcattttgataagtagttcgctcattaaattcatccttgtactagtgacttgta |
216 |
Q |
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| T |
38189627 |
taatattgatgaaagaaaaatgatatatttgatactaaatggagtttcattttgataagtagtttgctcattaaattcatccttgtactagtgacttgta |
38189528 |
T |
|
| Q |
217 |
aatgtaatttgcttcttatcatatataaatattgttttcttagcttcatgttgattgttttcggtaaacaaaagaattttctaaagaaatgagactaaac |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189527 |
aatgtaatttgcttcttatcatatagaaatattgttttcttagcttcatgttgattgttttcggtaaacaaaagaattttctaaagaaatgagactaaac |
38189428 |
T |
|
| Q |
317 |
ttcattgcaagttgtactaaagaatagccaaatgaaaagtatatatacaagttagatgaacatgataaccacacagcgcggcaccaaaacagacgcacca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38189427 |
ttcattgcaagttgtactaaagaatagccaaatgaaaagtatatatacaagttagatgaacatgataaccacacagcgcagcaccaaaacagacgcacca |
38189328 |
T |
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| Q |
417 |
aaaacaccggcccgtttcatgagtattat |
445 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
38189327 |
aaaacaccggcccgtttcatgaatattat |
38189299 |
T |
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