View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_high_12 (Length: 451)
Name: NF18636_high_12
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 201 - 443
Target Start/End: Original strand, 50269743 - 50269988
Alignment:
| Q |
201 |
acccaacatgtacttgttctcctcttatattctttccttagtttcccgtattcatctttatcatctttaacgtgtatgcatacatgtattcacgttcttc |
300 |
Q |
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| T |
50269743 |
acccaacatgtacttgttctcctcttatattctttccttagtttcccgtattcatctttatcatctttaacgtgtatgcatacatgtattcacgttcttc |
50269842 |
T |
|
| Q |
301 |
cgatttaaaggtttagcatgaaatgtcaccgtcgaattgatgcctatactctagggccattataatgaaggaagcaaattgatgataacggacc---att |
397 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50269843 |
cgatttaaaggtctagcatgaaatgtcaccgtcgaattgatgcctatactctagggccattataatgaaggaagcaaattgatgataacggaccataatt |
50269942 |
T |
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| Q |
398 |
ttacttgtgttttttatgtggaaattgaagagaagaagaaaagtat |
443 |
Q |
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| T |
50269943 |
ttacttgtgttttttatgtggaaattgaagagaagaagaaaagtat |
50269988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 50269563 - 50269670
Alignment:
| Q |
42 |
tctcatggcacctgtatggttgatcaatatcacataacattgacaccacaatgtcacacaaatgttcta-ctcgttacacaagccacaccattgaccatc |
140 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |
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| T |
50269563 |
tctcatggcacctgtgtagttgatcaatatcacataacattgacaccacaatgtcacacaaatattctacctcgatacacaagccacaccattgaccatc |
50269662 |
T |
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| Q |
141 |
ttctagga |
148 |
Q |
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|||||||| |
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| T |
50269663 |
ttctagga |
50269670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 27023391 - 27023338
Alignment:
| Q |
56 |
tatggttgatcaatatcacataacattgacaccacaatgtcacacaaatgttct |
109 |
Q |
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| T |
27023391 |
tatgattgatcaatatcacataatattaacaccacaatatcacccaaatattct |
27023338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 12144262 - 12144301
Alignment:
| Q |
60 |
gttgatcaatatcacataacattgacaccacaatgtcaca |
99 |
Q |
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| T |
12144262 |
gttgatcaatatcacatgaaattgacaccacaatgtcaca |
12144301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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