View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18636_high_21 (Length: 328)

Name: NF18636_high_21
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18636_high_21
NF18636_high_21
[»] chr5 (5 HSPs)
chr5 (29-312)||(13484422-13484705)
chr5 (140-194)||(17145352-17145406)
chr5 (139-211)||(9123832-9123904)
chr5 (139-211)||(18391602-18391674)
chr5 (139-186)||(2001982-2002029)
[»] chr4 (12 HSPs)
chr4 (139-184)||(7922264-7922309)
chr4 (139-211)||(19854567-19854639)
chr4 (139-211)||(19908694-19908766)
chr4 (142-186)||(33900736-33900780)
chr4 (142-208)||(24488427-24488493)
chr4 (150-208)||(47806246-47806304)
chr4 (142-211)||(10082407-10082476)
chr4 (139-192)||(11286787-11286840)
chr4 (163-207)||(9990292-9990336)
chr4 (139-179)||(10519137-10519177)
chr4 (147-211)||(12671735-12671799)
chr4 (159-211)||(16432944-16432996)
[»] chr3 (9 HSPs)
chr3 (142-211)||(38869505-38869574)
chr3 (141-184)||(13992675-13992718)
chr3 (139-186)||(17588364-17588411)
chr3 (139-181)||(47377366-47377408)
chr3 (139-184)||(8113576-8113621)
chr3 (140-185)||(31138420-31138465)
chr3 (139-192)||(43334518-43334571)
chr3 (139-211)||(5702166-5702236)
chr3 (139-211)||(26768403-26768475)
[»] chr2 (13 HSPs)
chr2 (139-211)||(18324881-18324953)
chr2 (139-211)||(24393247-24393319)
chr2 (139-186)||(27934869-27934916)
chr2 (139-181)||(7413206-7413248)
chr2 (139-185)||(9459070-9459116)
chr2 (139-181)||(37320534-37320576)
chr2 (139-180)||(40896527-40896568)
chr2 (139-176)||(44926423-44926460)
chr2 (139-188)||(45032695-45032744)
chr2 (163-211)||(3503000-3503048)
chr2 (147-211)||(12124555-12124619)
chr2 (161-201)||(19549460-19549500)
chr2 (139-211)||(34903519-34903591)
[»] chr7 (11 HSPs)
chr7 (139-185)||(34885876-34885922)
chr7 (139-211)||(5458058-5458130)
chr7 (139-187)||(8683072-8683120)
chr7 (139-194)||(5352331-5352386)
chr7 (138-181)||(12288372-12288415)
chr7 (140-211)||(32896451-32896522)
chr7 (139-176)||(37930046-37930083)
chr7 (139-188)||(48980489-48980538)
chr7 (139-183)||(24991783-24991827)
chr7 (139-175)||(34607010-34607046)
chr7 (139-179)||(37240097-37240137)
[»] chr8 (9 HSPs)
chr8 (142-211)||(1244692-1244761)
chr8 (139-211)||(17704015-17704087)
chr8 (139-211)||(33445572-33445644)
chr8 (158-208)||(5880974-5881024)
chr8 (138-188)||(8442497-8442547)
chr8 (139-205)||(30623295-30623361)
chr8 (139-184)||(13286133-13286178)
chr8 (139-211)||(27750891-27750963)
chr8 (139-211)||(44293577-44293649)
[»] chr6 (2 HSPs)
chr6 (139-183)||(26522474-26522518)
chr6 (139-181)||(788868-788910)
[»] chr1 (3 HSPs)
chr1 (142-181)||(15764037-15764076)
chr1 (139-188)||(28039870-28039919)
chr1 (139-211)||(40227831-40227903)
[»] scaffold0007 (1 HSPs)
scaffold0007 (143-192)||(202594-202643)
[»] scaffold0197 (1 HSPs)
scaffold0197 (139-211)||(21742-21814)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 13484705 - 13484422
Alignment:
Q  29 tcaagaacctagctatatacatgatataatacacaaaagttaaattattttgcacttacaatttaaaaaagtttgcatatgtatccgttaattaaaaaat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484705 tcaagaacctagctatatacatgatataatacacaaaagttaaattatttttcacttacaatttaaaaaagtttgcatatgtatccgttaattaaaaaat 13484606  T
Q  129 ttgttttcacgagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaattttcaaaatatttacg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484605 ttgttttcacgagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaattttcaaaatatttacg 13484506  T
Q  229 taacaaattataatatttagattcatttataattgttggtagatattcatttataatatgggtaaatttgagtaaatacgtttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484505 taacaaattataatatttagattcatttataattgttggtagatattcatttataatatgggtaaatttgagtaaatacgtttt 13484422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 17145406 - 17145352
Alignment:
Q  140 agcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcga 194  Q
    |||||| |||||||||| ||||||||| ||||||||| ||||||||||| |||||    
T  17145406 agcttaactcagttggtaaagacaatgtataatatatgcaagatctgaggttcga 17145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 9123904 - 9123832
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| |||||||||||||||||||  |||||| ||  ||||| ||||  ||||||||||    
T  9123904 gagcttaactcagttggtaaagacaatgcataatatatgtaagatccgaagttcgaacctcagacaccacaaa 9123832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 18391602 - 18391674
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| | |||||||||||| |||| |||| || ||| ||||| |||||| |||||||||    
T  18391602 gagcttagctcagttggtaaggacaatgcataaaatatgcaaggtccgaggttcgaacctcgaccaccacaaa 18391674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 2001982 - 2002029
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 186  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  2001982 gagcttatttcagttggtaaagacattgcataatatatacaaggtctg 2002029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 7922309 - 7922264
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 184  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  7922309 gagcttatctcagttggtaaagacaatgcataatatatgcaagatc 7922264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 19854567 - 19854639
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| ||||||||||   ||||||||||||||||| ||||||| | | ||||| ||||| ||||||||||    
T  19854567 gagcttagctcagttggtatggacaatgcataatatatgcaagatccggggttcgaacctcggacaccacaaa 19854639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 19908694 - 19908766
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| || ||| ||||| || ||| |||||||||    
T  19908694 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcgaaccccgaccaccacaaa 19908766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 33900780 - 33900736
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaagatctg 186  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||    
T  33900780 cttatctcagttggtaaggacaatgcataatatatgcaagatctg 33900736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 24488427 - 24488493
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 208  Q
    |||| |||||||||| | |||||||||||||||||||||| |  |||||| || ||||| |||||||    
T  24488427 cttaactcagttggtaatgacaatgcataatatatacaaggttcgagatttgaacctcggacaccac 24488493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 47806304 - 47806246
Alignment:
Q  150 agttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 208  Q
    ||||||||| ||||||||||||||||| |||| |||| | ||||| || ||||||||||    
T  47806304 agttggtgaggacaatgcataatatatgcaaggtctggggttcgaaccccgaacaccac 47806246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 10082407 - 10082476
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||| ||||||||||   |||||| ||||||||||||||||| |||| ||| | |||||| |||||||||    
T  10082407 cttagctcagttggtagggacaatacataatatatacaagatatgaggttcaaacctcgaccaccacaaa 10082476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 11286840 - 11286787
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 192  Q
    |||||||  |||||||||  |||||||||||||||||| |||| ||||||||||    
T  11286840 gagcttagttcagttggtagagacaatgcataatatatgcaaggtctgagattc 11286787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 9990292 - 9990336
Alignment:
Q  163 aatgcataatatatacaagatctgagattcgatcctcgaacacca 207  Q
    |||||||||||||| ||||||||||| ||||| ||||| ||||||    
T  9990292 aatgcataatatatgcaagatctgaggttcgaacctcggacacca 9990336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 10519137 - 10519177
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatataca 179  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  10519137 gagcttagctcagttggtatagacaatgcataatatataca 10519177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 12671799 - 12671735
Alignment:
Q  147 ctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||||||  ||||||||||||| |||| ||||||| | | ||||| |||||| |||||||||    
T  12671799 ctcagttggtatagacaatgcataaaatatgcaagatccggggttcgaacctcgaccaccacaaa 12671735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 16432996 - 16432944
Alignment:
Q  159 agacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||||||||||||||| |||||||||| ||| | || ||| |||||||||    
T  16432996 agacaatgcataatatatataagatctgaggttcaaaccccgaccaccacaaa 16432944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 38869574 - 38869505
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||| |||||||||| |  |||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  38869574 cttagctcagttggtaagaacaatgcataatatatacaagatccgaggttcgaaactcgaacaccacaaa 38869505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 13992675 - 13992718
Alignment:
Q  141 gcttatctcagttggtgaagacaatgcataatatatacaagatc 184  Q
    ||||| |||||||||| | |||||||||||||||||||||||||    
T  13992675 gcttagctcagttggtaaggacaatgcataatatatacaagatc 13992718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 17588364 - 17588411
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 186  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  17588364 gagcttaactcagttggtaaggacaatgcataatatatgcaagatctg 17588411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 47377408 - 47377366
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    ||||||| |||||||||| | ||||||||||||||||||||||    
T  47377408 gagcttaactcagttggtaaggacaatgcataatatatacaag 47377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 8113621 - 8113576
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 184  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||    
T  8113621 gagcttagctcagttggtaaggacaatgcataatatatgcaagatc 8113576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 31138420 - 31138465
Alignment:
Q  140 agcttatctcagttggtgaagacaatgcataatatatacaagatct 185  Q
    ||||||||||||||| |  |||||||||||||||||| ||||||||    
T  31138420 agcttatctcagttgatagagacaatgcataatatatgcaagatct 31138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 43334571 - 43334518
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 192  Q
    ||||||| ||||| |||| | ||| |||||||||||||||||| ||||||||||    
T  43334571 gagcttaactcagctggtaaggaccatgcataatatatacaaggtctgagattc 43334518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5702236 - 5702166
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| ||||||||||||||||||| |||| | |||| ||||| ||| | ||||||||||    
T  5702236 gagcttagctcagttggt-aagacaatgcataatatatgcaaggtttgaggttcgaacct-ggacaccacaaa 5702166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 26768403 - 26768475
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||||||||| ||||  ||||||||||||| |||| |||| |||||| ||| | || ||| |||||||||    
T  26768403 gagcttatctcagctggtatagacaatgcataaaatatgcaaggtctgagcttcaaaccccgaccaccacaaa 26768475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 18324953 - 18324881
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||  ||||||| ||  ||||||||||||    
T  18324953 gagcttaactcagttggtaaggacaatgcataatatatgcaagatctaggattcgaaccctgaacaccacaaa 18324881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 24393247 - 24393319
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||| | | ||||||||||||||||| |||| |||||| ||||| || || ||||||||||    
T  24393247 gagcttagctcagttgttaaggacaatgcataatatatgcaaggtctgaggttcgaaccccggacaccacaaa 24393319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 27934916 - 27934869
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctg 186  Q
    ||||||| |||||||||| | |||||| ||||||||||||||||||||    
T  27934916 gagcttagctcagttggtaaggacaatacataatatatacaagatctg 27934869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 7413248 - 7413206
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    ||||||| |||||||||| | ||||||||||||||||||||||    
T  7413248 gagcttagctcagttggtaaggacaatgcataatatatacaag 7413206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 9459116 - 9459070
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatct 185  Q
    ||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  9459116 gagcttagctcagttgataaagacaatgcataatatatacaaaatct 9459070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 37320576 - 37320534
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  37320576 gagcttaactcagttggtaaagacaatgcataatatatgcaag 37320534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 40896568 - 40896527
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaa 180  Q
    ||||||| ||||||||||  ||||||||||||||||||||||    
T  40896568 gagcttagctcagttggtatagacaatgcataatatatacaa 40896527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 44926460 - 44926423
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatat 176  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  44926460 gagcttatctcagttggtaaagacaatgcattatatat 44926423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 45032695 - 45032744
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 188  Q
    ||||||| ||||||||||   ||||||||||||||||| |||||||||||    
T  45032695 gagcttacctcagttggtagggacaatgcataatatatgcaagatctgag 45032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 3503000 - 3503048
Alignment:
Q  163 aatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||||||||||||| |||| |||||||||||| ||  ||||||||||||    
T  3503000 aatgcataatatatgcaaggtctgagattcgaaccctgaacaccacaaa 3503048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 12124555 - 12124619
Alignment:
Q  147 ctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||||||||| | ||||||||||||||||| |||| || | | ||||| |||| |||||||||||    
T  12124555 ctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacctcaaacaccacaaa 12124619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 19549460 - 19549500
Alignment:
Q  161 acaatgcataatatatacaagatctgagattcgatcctcga 201  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  19549460 acaatgcataatatatgcaaggtctgagattcgaacctcga 19549500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 34903519 - 34903591
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||||||  ||||||||| | |||| |||||||||||| |||| |||||| ||||| || || ||||||||||    
T  34903519 gagcttagttcagttggtaaggacagtgcataatatatgcaaggtctgaggttcgaaccccggacaccacaaa 34903591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 34885876 - 34885922
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatct 185  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  34885876 gagcttagctcagttggtgaagacaatgcatgatatatgcaagatct 34885922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5458130 - 5458058
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||| | |  |||||||||||||||| |||| |||| ||||| | ||||||||||||||||    
T  5458130 gagcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaacctcgaacaccacaaa 5458058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 8683072 - 8683120
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctga 187  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||||    
T  8683072 gagcttagctcagttggtatagacaatgcataatatatgcaagatctga 8683120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 5352331 - 5352386
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcga 194  Q
    ||||||| |||||||||| | |||||| ||||||||||||||| || |||||||||    
T  5352331 gagcttagctcagttggtaaggacaatacataatatatacaaggtccgagattcga 5352386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 12288372 - 12288415
Alignment:
Q  138 cgagcttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  12288372 cgagcttaactcagttggtgaggacaatgcataatgtatacaag 12288415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 32896522 - 32896451
Alignment:
Q  140 agcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||||| |||||||||  | |||||||||||||||||||||||| || | ||||| ||||  ||||||||||    
T  32896522 agcttaactcagttgggaaggacaatgcataatatatacaagatttggggttcgaacctcagacaccacaaa 32896451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 37930046 - 37930083
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatat 176  Q
    |||||||||||||||||| | |||||||||||||||||    
T  37930046 gagcttatctcagttggtaaggacaatgcataatatat 37930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 48980489 - 48980538
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 188  Q
    ||||||| ||||||||||   ||||||||||||||||||||| |||||||    
T  48980489 gagcttagctcagttggtatggacaatgcataatatatacaatatctgag 48980538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 24991783 - 24991827
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagat 183  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||    
T  24991783 gagcttagctcagttggtaaggacaatgcataatatatgcaagat 24991827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 34607046 - 34607010
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatata 175  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34607046 gagcttatctcagttggtaaagataatgcataatata 34607010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 37240137 - 37240097
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatataca 179  Q
    ||||||| |||||||||| |||||| |||||||||||||||    
T  37240137 gagcttaactcagttggtaaagacattgcataatatataca 37240097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 1244761 - 1244692
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    |||| |||||||||| | |||||||||||||||||||||| |||| | ||||| || || ||||||||||    
T  1244761 cttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccacaaa 1244692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 17704015 - 17704087
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| |||| ||||| | |||||  |||||||||    
T  17704015 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtctgtgattcaaacctcggccaccacaaa 17704087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 33445572 - 33445644
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| ||||||||||    ||||||||||||||||||||| | |||||||||| ||||  ||||||||||    
T  33445572 gagcttagctcagttggtaggaacaatgcataatatatacaaggtttgagattcgaacctcagacaccacaaa 33445644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 5881024 - 5880974
Alignment:
Q  158 aagacaatgcataatatatacaagatctgagattcgatcctcgaacaccac 208  Q
    |||||||||||||||||||||||| | |||||||| | |||| ||||||||    
T  5881024 aagacaatgcataatatatacaaggtttgagattcaaacctcaaacaccac 5880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 8442547 - 8442497
Alignment:
Q  138 cgagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 188  Q
    |||||||| |||||||||| | ||||||||||||||||| |||| ||||||    
T  8442547 cgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgag 8442497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 30623295 - 30623361
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacac 205  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| |||| | ||||| || |||||||    
T  30623295 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccccgaacac 30623361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 13286133 - 13286178
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatc 184  Q
    ||||||| ||||||||||  |||||||||||||||||| |||||||    
T  13286133 gagcttagctcagttggtatagacaatgcataatatatgcaagatc 13286178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 27750963 - 27750891
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| |||||||||| | |||| |||||||||||| |||| || | | ||||| |||||||||| |||||    
T  27750963 gagcttagctcagttggtaaggacagtgcataatatatgcaaggtccggggttcgaacctcgaacactacaaa 27750891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 44293577 - 44293649
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| ||||||||||  ||||||||||||||||||  |||||||| | ||||| ||  || |||||||||    
T  44293577 gagcttagctcagttggtatagacaatgcataatatatgtaagatctggggttcgaaccctgaccaccacaaa 44293649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 26522474 - 26522518
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagat 183  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||    
T  26522474 gagcttagctcagttggtaaggacaatgcataatatatacaagat 26522518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 788868 - 788910
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    |||||||||||||||||| | ||||||||||||||||| ||||    
T  788868 gagcttatctcagttggtaaggacaatgcataatatatgcaag 788910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 15764037 - 15764076
Alignment:
Q  142 cttatctcagttggtgaagacaatgcataatatatacaag 181  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  15764037 cttatctcagttggtaaggacaatgcataatatatacaag 15764076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 28039919 - 28039870
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgag 188  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| ||||||    
T  28039919 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgag 28039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 40227831 - 40227903
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| ||||||||||   |||||||||||| ||||||||| |||| | ||||| || ||| |||||||||    
T  40227831 gagcttagctcagttggtatggacaatgcataaaatatacaaggtctggggttcgaaccccgaccaccacaaa 40227903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 202594 - 202643
Alignment:
Q  143 ttatctcagttggtgaagacaatgcataatatatacaagatctgagattc 192  Q
    ||||||||||| || ||||| |||||||||||||| ||| ||||||||||    
T  202594 ttatctcagttagttaagacgatgcataatatatataaggtctgagattc 202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 21814 - 21742
Alignment:
Q  139 gagcttatctcagttggtgaagacaatgcataatatatacaagatctgagattcgatcctcgaacaccacaaa 211  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||| | |||| ||| |  ||||| |||||||||    
T  21814 gagcttagctcagttggtatagacaatgcataaaatatacaaggtatgaggttcaaatctcgaccaccacaaa 21742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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