View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_high_26 (Length: 258)
Name: NF18636_high_26
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40062795 - 40062554
Alignment:
| Q |
1 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgat |
100 |
Q |
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| T |
40062795 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtgat |
40062696 |
T |
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| Q |
101 |
ccccgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaag |
200 |
Q |
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||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40062695 |
ccccgctccccatctgtcaaaaaaagctccatagttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaag |
40062596 |
T |
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| Q |
201 |
ccattctatgcatgattggaaactacaaacacgaaaatctga |
242 |
Q |
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| T |
40062595 |
ccattctatgcataattggaaactacaaacacgaaaatctga |
40062554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40093447 - 40093211
Alignment:
| Q |
1 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgat |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40093447 |
atcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgat |
40093348 |
T |
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| Q |
101 |
ccccgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaag |
200 |
Q |
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| T |
40093347 |
ccccgctccccatgtgtcaaaaaaagctccatagttctgatgtgtatatggttcatg-----ttagatatagtaatgagagaaatcattgggggagcaag |
40093253 |
T |
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| Q |
201 |
ccattctatgcatgattggaaactacaaacacgaaaatctga |
242 |
Q |
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| T |
40093252 |
caattctatgcataattggaaactaaaaacaagaaaagctga |
40093211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 40081141 - 40080933
Alignment:
| Q |
4 |
aaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccc |
103 |
Q |
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|||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
40081141 |
aaaatttaagattgacctgatatgtccacttccgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccggtgatccc |
40081042 |
T |
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| Q |
104 |
cgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaagcca |
203 |
Q |
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| T |
40081041 |
tgctcccactgtgtcaaaaaaggctccatagttctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagcca |
40080942 |
T |
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| Q |
204 |
ttctatgca |
212 |
Q |
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|||||||| |
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| T |
40080941 |
gtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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