View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_high_27 (Length: 250)
Name: NF18636_high_27
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43307621 - 43307382
Alignment:
| Q |
1 |
actatgctaagattattcgccacaacctaattaagaccccttctaaagacgaaataggccttaattaaaatgtggacctaaccagggaagaannnnnnna |
100 |
Q |
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| T |
43307621 |
actatgctaagattattcgccacaacctaattaagaccccttataaagacgaaataggccttaatgaaaatgtggacctaaccagggaagaattttttta |
43307522 |
T |
|
| Q |
101 |
aattcatcgcaacaaacgcttttacgttggtgaagaggaatatcgattttaaaagacccttggttttgaagaaaccctaaaaaacaatatttataacatt |
200 |
Q |
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| T |
43307521 |
aattcatcgcaacaaacgcttttacgttggtgaagagaaatatcgattttaaaagacccttggttttgaagaaaccctaaaaaacaatatttataacatt |
43307422 |
T |
|
| Q |
201 |
atgcctggaatacttttattttatgtttgtagtacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43307421 |
atgcctggaatacttttattttatgtttgtagtacctttg |
43307382 |
T |
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