View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_high_33 (Length: 212)
Name: NF18636_high_33
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_high_33 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 4564597 - 4564413
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564597 |
ggattccaggtttgaaaaactttcggttaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
4564498 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcccctatg |
202 |
Q |
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| T |
4564497 |
tgataaagttcttggagactctacaattgttttgaatactttccatgaactttagagtgatgtaataaatgctctctcctctatg |
4564413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 4593117 - 4592933
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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||||||||||||||||||||||||| || ||||| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
4593117 |
ggattccaggtttgaaaaactttcggttgaaggacattgctgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggc |
4593018 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcccctatg |
202 |
Q |
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| T |
4593017 |
tgataaagatcataaaaactctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg |
4592933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 4617908 - 4617730
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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||||||| ||||||||||||||||| || ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| || | || || | || |
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| T |
4617908 |
ggattcccggtttgaaaaactttcggttgaaggacatcgttgactttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgc |
4617809 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcc |
196 |
Q |
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||| |||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4617808 |
agatcgagttaacaaagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcc |
4617730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 4602675 - 4602504
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||||| |||| || | |||| || |
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| T |
4602675 |
ggattccaggtttgaaaaactttcggttgaaggacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgc |
4602576 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgc |
189 |
Q |
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| T |
4602575 |
agatagatttaatagagactctactattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgc |
4602504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 4299195 - 4299246
Alignment:
| Q |
143 |
attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct |
194 |
Q |
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| T |
4299195 |
attgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctct |
4299246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 4517079 - 4517030
Alignment:
| Q |
143 |
attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct |
192 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||||||||||| |
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| T |
4517079 |
attgttttcaatacttctgatgaacttgagaatgatgtaataaatgctct |
4517030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 4568802 - 4568753
Alignment:
| Q |
143 |
attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct |
192 |
Q |
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|||||||| ||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
4568802 |
attgttttcaatacttataatgaacttgagagtgatgtagtaaaggctct |
4568753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 350 - 183
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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|
||||||||||||||||||||||||| || |||||| | ||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |
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| T |
350 |
ggattccaggtttgaaaaactttcggttgaaggatgttgttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgc |
251 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataa |
185 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
250 |
tgataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaataa |
183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 1675113 - 1674946
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
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|
||||||||||||||||||||||||| || |||||| | ||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |
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| T |
1675113 |
ggattccaggtttgaaaaactttcggttgaaggatgttgttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgc |
1675014 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataa |
185 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1675013 |
tgataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaataa |
1674946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 20863217 - 20863268
Alignment:
| Q |
143 |
attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct |
194 |
Q |
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|||||||| |||||||||||||| |||||||||||||| || |||| ||||| |
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| T |
20863217 |
attgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct |
20863268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 1282000 - 1281817
Alignment:
| Q |
18 |
ggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggc |
117 |
Q |
| |
|
||||||||||||||||||| || || || |||||||| ||||| ||||||||||| ||||| ||| |||||||||||||| || | ||||| ||| |
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| T |
1282000 |
ggattccaggtttgaaaaatttccggttgaaggatattgttgactttatcaggacaagagatcgaaacgatattatgttagaattctttattgaaatggc |
1281901 |
T |
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| Q |
118 |
tgataaagttcctggagactctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcccctat |
201 |
Q |
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|||| |||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1281900 |
agatagagttaatagagactctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctat |
1281817 |
T |
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