View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_14 (Length: 444)
Name: NF18636_low_14
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 7152687 - 7153105
Alignment:
| Q |
18 |
acatgaagtcaatgatctgcactacatgtcaaagctctggaattgtgctacactatacacaaagatattaaaagctctcgaccttgatgatctattcatc |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152687 |
acatgaagtcaatgttctgcactacatgtcaaagctctggacttgtgctacactatacacaaagatattaaaagctctcgaccttgatgatctattcatc |
7152786 |
T |
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| Q |
118 |
atagataaagacaaagctctgcaacaagatt-aagtcaactttgtggtagtcaatactatgt---gtttacaagcttttgaagtgagatcaatatatagt |
213 |
Q |
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| T |
7152787 |
atagataaagacagggctctgcaacaagattcaggtcaactatgtggtagtcaatactatgtatattgtacaagcctttgaagtgagatca--atatagt |
7152884 |
T |
|
| Q |
214 |
aagcaattgactcaaagaatcatcatgcatgtacac-acgactcttagataagaaatgatagtttattctgactcaagcaagagagtaaagctccataat |
312 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152885 |
aagcaattgactcaaagaatcatcatgcatgtacgcaacgactcttagataagaaaggatagtttattctgactcaagcaagagagtaaagctccataat |
7152984 |
T |
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| Q |
313 |
tgacatcattaatgaaattgaatgactgatgtgttgaccacggttct-ccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152985 |
tgacatcattaatgaaattgaatgactgatgtgttgaccacgattctcccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaac |
7153084 |
T |
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| Q |
412 |
aacgctaatatacttcatctc |
432 |
Q |
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| T |
7153085 |
aacgctaatatacttcatctc |
7153105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 9021488 - 9021399
Alignment:
| Q |
324 |
atgaaattgaatgactgatgtgttgaccacggttctccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaacaa |
413 |
Q |
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|||| ||||||||||||| ||| ||||| | |||||||||||||||| |||| || | | ||| |||||| || |||||||||||||| |
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| T |
9021488 |
atgacattgaatgactgaagtgctgacctcaaatctccaagatatcttagcattcattcaaacatccaaagataatgatttcttcaacaa |
9021399 |
T |
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