View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_15 (Length: 443)
Name: NF18636_low_15
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 26967901 - 26967479
Alignment:
| Q |
9 |
agcataggtaacttaaaacatacagtatttcagagcatagctaacttaaaaacataacagtattaagtgaagatgagctgagttggctggcctgacttta |
108 |
Q |
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| T |
26967901 |
agcataggtaacttaaaacatacagtattttagagtataactaacttaaaaacataacagtattaagtgaagatgagttgagttggctggcctgacttta |
26967802 |
T |
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| Q |
109 |
aaaatcaaacaagtgttgagtgacgatgaatcagtctggtttgaacagttgaatcagtgttgaatgaggacgatttgagttggcatgacttggtctgtca |
208 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
26967801 |
aaaatcaaacaagtgttgagtgacgataaatcggtctggtttgaacagttgaatcagtgttgaatgaggacgatttgagttggcatgacttgatcagtca |
26967702 |
T |
|
| Q |
209 |
aaccaatgaggttgagatcttgctagttggtcaactaaagtattacaagtcacatgagatggttcattcatgaagtcaacaattcaccaagcgtcaagcc |
308 |
Q |
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| T |
26967701 |
aaccaatgaggttgagatcttgctagttggtcaactaaagtattacaagtcacatgaaatggttcatccatgaagtcaacaattcaccaagcgtcaagcc |
26967602 |
T |
|
| Q |
309 |
tcttaagacatagacatttg-tttttattcgg-cga-ata-attcacaaacattccaaaagttactgctttgtaactgagttataaatattaatttaatt |
404 |
Q |
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| T |
26967601 |
tcttaagacatagacgtttgttttttatttggtcgatgtatattcacgcacaatccagaagttactgctttgtaactgagttataaatattaatttaatt |
26967502 |
T |
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| Q |
405 |
caaactattccacatgtcatcat |
427 |
Q |
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| T |
26967501 |
caaactattcgacatgtcatcat |
26967479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 11801091 - 11801002
Alignment:
| Q |
40 |
agagcatagctaacttaaaaacataacagtattaagtgaagatgagctgagttggctggcctgactttaaaaatcaaacaagtgttgagtg |
130 |
Q |
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| T |
11801091 |
agagcatagttaacttaaaa-cagaatagtatcaagtgaagatgagctgagctggttggtctgtcttgaacagtcaaaccagtgttgagtg |
11801002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 32876816 - 32876773
Alignment:
| Q |
221 |
tgagatcttgctagttggtcaactaaagtattacaagtcacatg |
264 |
Q |
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| T |
32876816 |
tgagatcttgctagtcggtcaagtaaggtattacaagtcacatg |
32876773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 11800880 - 11800839
Alignment:
| Q |
221 |
tgagatcttgctagttggtcaactaaagtattacaagtcacatg |
264 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
11800880 |
tgagatcttgctagttggt--agtaaagtattacaagtcacatg |
11800839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 31679068 - 31679030
Alignment:
| Q |
68 |
gtattaagtgaagatgagctgagttggctggcctgactt |
106 |
Q |
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| T |
31679068 |
gtattaagtgaagatgagctgagctggctggcctgactt |
31679030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 5168983 - 5168942
Alignment:
| Q |
221 |
tgagatcttgctagttggtcaactaaagtattacaagtcaca |
262 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
5168983 |
tgaggtcttgctagttagtcaaataaagtattacaagtcaca |
5168942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 13968694 - 13968634
Alignment:
| Q |
68 |
gtattaagtgaagatgagctgagttggctggcctgacttt-aaaaatcaaacaagtgttga |
127 |
Q |
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|||||||||||||||||| |||| |||||||| ||||||| || |||||| | |||||||| |
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| T |
13968694 |
gtattaagtgaagatgagatgagctggctggcatgactttgaacaatcaagccagtgttga |
13968634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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