View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_17 (Length: 424)
Name: NF18636_low_17
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 49583606 - 49584025
Alignment:
| Q |
1 |
caaatagcattacctatcccaataacttggataaagagttatgatattcgggaagaaacaaagattaggatgcatgaggagcatgaacataaagggcaga |
100 |
Q |
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| T |
49583606 |
caaataggattacctatcccaataacttggataaagagttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcaga |
49583705 |
T |
|
| Q |
101 |
ttcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaa |
200 |
Q |
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| T |
49583706 |
ttcttgttcctggctctcgaagtgacaactggactgaaattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaa |
49583805 |
T |
|
| Q |
201 |
aaaatttatcggcaataagaagatgaaggacatattgtcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaa |
300 |
Q |
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| T |
49583806 |
aaaatttatcggcaataagaagatgaaggacatattgtcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaa |
49583905 |
T |
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| Q |
301 |
ggcaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaggttc |
400 |
Q |
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| T |
49583906 |
gggaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttc |
49584005 |
T |
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| Q |
401 |
aaaatgaattacttgaggta |
420 |
Q |
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| T |
49584006 |
aaaatgaattacttgaggta |
49584025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
| Q |
87 |
acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac |
186 |
Q |
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| T |
49588989 |
acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac |
49589088 |
T |
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| Q |
187 |
ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg |
251 |
Q |
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| T |
49589089 |
ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg |
49589153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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