View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_18 (Length: 418)
Name: NF18636_low_18
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 38927651 - 38927247
Alignment:
| Q |
1 |
gttgaactagctcagtttgttctagcagcagctgagagagtaggttgtcaacaatttgaacgtgcaaacatgttactttcacattttcatctcatgaatg |
100 |
Q |
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| T |
38927651 |
gttgaactagctcagtttgttctagcagcagctgagagagtaggttgtcaacaatttgaacgtgcaaacatgttactttcacattttcatctcatgaatg |
38927552 |
T |
|
| Q |
101 |
aaagtggaaatattggaagcacagttcagagacttcttttccatttctctcaagcacttcaagagagaatcaacagagaaaccggacgaggaaagatgaa |
200 |
Q |
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| T |
38927551 |
aaagtggaaatattggaagcacagttcagagacttcttttccatttctctcaagcccttcaagagagaatcaacagagaaaccggacgaggaaagatgaa |
38927452 |
T |
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| Q |
201 |
actgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatcaaaaaattcctttc |
300 |
Q |
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| T |
38927451 |
actgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatcaaaaaattcctttc |
38927352 |
T |
|
| Q |
301 |
aatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatattggatgtggagtga |
400 |
Q |
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| T |
38927351 |
aatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatattggatgtggagtga |
38927252 |
T |
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| Q |
401 |
tgagt |
405 |
Q |
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| T |
38927251 |
tgagt |
38927247 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
280 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
348 |
Q |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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