View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18636_low_19 (Length: 336)
Name: NF18636_low_19
Description: NF18636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18636_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 17119319 - 17119010
Alignment:
| Q |
10 |
aagaaaatgaaaccctaagatggtaaatgtatagtaaatgaaagttaataaagcaactgatggaaaagagaatatgtgtgtgtagataatttgcgagaaa |
109 |
Q |
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| T |
17119319 |
aagaaaatgaaaccctaagatggtaaatgtatagtaaatgaaagttaataaagcaactgatggaaaagagaatatgtgtct--agataatttgcgagaaa |
17119222 |
T |
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| Q |
110 |
aattgatttgaatgaattgattatgtaaaattgtttaactaaaagtgaggttgaagattgacgggttaatgtttgaatattcaattttaaaatcaaaagt |
209 |
Q |
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| T |
17119221 |
aattgatttaaatgaattgattatgtaaaattgtttaactaaaagtgaggttgaagattgaccggttaatgtttgaatattcaattttaaaatcaaaagt |
17119122 |
T |
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| Q |
210 |
tctaatttggaacttcttaaaatcaattatgaagataaaattaatacaaatcaaatatatatcaaaatcaattctataactctaaaattaatttcagcac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
17119121 |
tctaatttggaacttcttaaaatcaattatgaagataaaattaatacaaatcaaatatatatcaaaatcaattctacaactctaaaatcaatttcagcac |
17119022 |
T |
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| Q |
310 |
caaccattaatt |
321 |
Q |
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|||||||||||| |
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| T |
17119021 |
caaccattaatt |
17119010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 27374205 - 27374240
Alignment:
| Q |
107 |
aaaaattgatttgaatgaattgattatgtaaaattg |
142 |
Q |
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| T |
27374205 |
aaaaattgatttgaatgaattgattctgtaaaattg |
27374240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 15135017 - 15134989
Alignment:
| Q |
226 |
ttaaaatcaattatgaagataaaattaat |
254 |
Q |
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| T |
15135017 |
ttaaaatcaattatgaagataaaattaat |
15134989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 24364102 - 24364138
Alignment:
| Q |
107 |
aaaaattgattt-gaatgaattgattatgtaaaattg |
142 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
24364102 |
aaaaattgattttgaatgaattgattatgtaaaattg |
24364138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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